Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z5O entry

There are 3 chains in PDB entry 5Z5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1THR 67
A
 GLU 69MET 314
B
 GLY -3GLN 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5Z5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
7 18Right-handed alpha
Helix 3
AA3
A
24 51Right-handed alpha
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
87 91Right-handed 310
Helix 6
AA6
A
123 142Right-handed alpha
Helix 7
AA7
A
148 156Right-handed alpha
Helix 8
AA8
A
160 164Right-handed 310
Helix 9
AA9
A
166 177Right-handed alpha
Helix 10
AB1
A
216 227Right-handed alpha
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
301 305Right-handed 310
Helix 13
AB4
B
4 6Right-handed 310
Helix 14
AB5
B
7 18Right-handed alpha
Helix 15
AB6
B
24 51Right-handed alpha
Helix 16
AB7
B
68 72Right-handed 310
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There are 3 sheets in PDB entry 5Z5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
292 296parallel
Strand 4
A
274 280anti-parallel
Strand 5
A
261 271anti-parallel
Strand 6
A
104 105anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
292 296parallel
Strand 4
A
274 280anti-parallel
Strand 5
A
261 271anti-parallel
Strand 6
A
230 234anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
310 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il