Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z68 entry

There are 4 chains in PDB entry 5Z68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -3	LEU 364
B	TYR -2	ALA 365
C	HIS -7	ALA 365
D	TYR -2	LEU 364

There are 51 helices in PDB entry 5Z68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	49	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	105	110	Right-handed 310
Helix 4	AA4	A	119	121	Right-handed 310
Helix 5	AA5	A	122	128	Right-handed alpha
Helix 6	AA6	A	129	145	Right-handed alpha
Helix 7	AA7	A	145	167	Right-handed alpha
Helix 8	AA8	A	175	217	Right-handed alpha
Helix 9	AA9	A	235	250	Right-handed alpha
Helix 10	AB1	A	250	258	Right-handed alpha
Helix 11	AB2	A	263	267	Right-handed 310
Helix 12	AB3	A	284	307	Right-handed alpha
Helix 13	AB4	A	325	333	Right-handed alpha
Helix 14	AB5	B	35	49	Right-handed alpha
Helix 15	AB6	B	56	61	Right-handed alpha
Helix 16	AB7	B	105	110	Right-handed 310
Helix 17	AB8	B	119	121	Right-handed 310
Helix 18	AB9	B	122	128	Right-handed alpha
Helix 19	AC1	B	129	145	Right-handed alpha
Helix 20	AC2	B	145	173	Right-handed alpha
Helix 21	AC3	B	179	217	Right-handed alpha
Helix 22	AC4	B	235	250	Right-handed alpha
Helix 23	AC5	B	250	258	Right-handed alpha
Helix 24	AC6	B	263	267	Right-handed 310
Helix 25	AC7	B	283	306	Right-handed alpha
Helix 26	AC8	B	317	321	Right-handed 310
Helix 27	AC9	B	323	333	Right-handed alpha
Helix 28	AD1	C	35	49	Right-handed alpha
Helix 29	AD2	C	56	61	Right-handed alpha
Helix 30	AD3	C	119	122	Right-handed 310
Helix 31	AD4	C	123	128	Right-handed alpha
Helix 32	AD5	C	129	142	Right-handed alpha
Helix 33	AD6	C	145	167	Right-handed alpha
Helix 34	AD7	C	176	179	Right-handed 310
Helix 35	AD8	C	180	216	Right-handed alpha
Helix 36	AD9	C	235	249	Right-handed alpha
Helix 37	AE1	C	252	256	Right-handed 310
Helix 38	AE2	C	263	267	Right-handed 310
Helix 39	AE3	C	283	306	Right-handed alpha
Helix 40	AE4	C	323	328	Right-handed alpha
Helix 41	AE5	D	35	49	Right-handed alpha
Helix 42	AE6	D	57	61	Right-handed 310
Helix 43	AE7	D	119	121	Right-handed 310
Helix 44	AE8	D	122	128	Right-handed alpha
Helix 45	AE9	D	129	142	Right-handed alpha
Helix 46	AF1	D	145	165	Right-handed alpha
Helix 47	AF2	D	178	217	Right-handed alpha
Helix 48	AF3	D	235	255	Right-handed alpha
Helix 49	AF4	D	263	267	Right-handed 310
Helix 50	AF5	D	283	307	Right-handed alpha
Helix 51	AF6	D	324	333	Right-handed alpha

There are 12 sheets in PDB entry 5Z68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	2	9	anti-parallel
Strand 3	A	67	75	anti-parallel
Strand 4	A	82	89	anti-parallel
Strand 5	A	93	98	anti-parallel
Strand 6	A	101	102	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	311	314	parallel
Strand 3	A	338	342	parallel
Strand 4	A	25	29	parallel
Strand 5	A	352	357	parallel
Strand 6	A	360	362	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	225	first strand
Strand 2	A	268	273	anti-parallel
Strand 3	A	276	277	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	3	9	anti-parallel
Strand 3	B	67	74	anti-parallel
Strand 4	B	82	89	anti-parallel
Strand 5	B	93	98	anti-parallel
Strand 6	B	101	102	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	311	314	parallel
Strand 3	B	338	342	parallel
Strand 4	B	25	29	parallel
Strand 5	B	352	356	parallel
Strand 6	B	361	363	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	268	273	anti-parallel
Strand 3	B	276	277	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	67	75	anti-parallel
Strand 4	C	82	89	anti-parallel
Strand 5	C	94	98	anti-parallel
Strand 6	C	101	102	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	311	315	parallel
Strand 3	C	338	342	parallel
Strand 4	C	25	29	parallel
Strand 5	C	352	357	parallel
Strand 6	C	360	363	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	225	first strand
Strand 2	C	268	273	anti-parallel
Strand 3	C	276	277	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	67	75	anti-parallel
Strand 4	D	82	89	anti-parallel
Strand 5	D	93	98	anti-parallel
Strand 6	D	101	102	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	118	first strand
Strand 2	D	311	314	parallel
Strand 3	D	338	340	parallel
Strand 4	D	25	30	parallel
Strand 5	D	353	356	parallel
Strand 6	D	361	363	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	225	first strand
Strand 2	D	268	273	anti-parallel
Strand 3	D	276	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z68

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z68