Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z6C entry

There is 1 chain in PDB entry 5Z6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14ASN 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5Z6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 40Right-handed alpha
Helix 2
AA2
A
51 66Right-handed alpha
Helix 3
AA3
A
75 83Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
91 97Right-handed alpha
Helix 6
AA6
A
106 112Right-handed 310
Helix 7
AA7
A
135 141Right-handed alpha
Helix 8
AA8
A
151 167Right-handed alpha
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
A
204 220Right-handed alpha
Helix 11
AB2
A
255 263Right-handed alpha
Helix 12
AB3
A
297 311Right-handed alpha
Helix 13
AB4
A
311 319Right-handed alpha
Helix 14
AB5
A
327 335Right-handed alpha
Helix 15
AB6
A
336 338Right-handed 310
Helix 16
AB7
A
339 353Right-handed alpha
Helix 17
AB8
A
354 356Right-handed 310
Helix 18
AB9
A
366 383Right-handed alpha
Helix 19
AC1
A
387 404Right-handed alpha
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There are 3 sheets in PDB entry 5Z6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
15 20parallel
Strand 3
A
71 74parallel
Strand 4
A
284 290anti-parallel
Strand 5
A
122 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
118 119anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
129 134anti-parallel
Strand 3
A
267 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il