Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z6P entry

There are 2 chains in PDB entry 5Z6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	ARG 739
B	ALA 11	ARG 739

There are 37 helices in PDB entry 5Z6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	130	134	Right-handed 310
Helix 2	AA2	A	215	231	Right-handed alpha
Helix 3	AA3	A	328	337	Right-handed alpha
Helix 4	AA4	A	347	351	Right-handed 310
Helix 5	AA5	A	371	382	Right-handed alpha
Helix 6	AA6	A	383	386	Right-handed 310
Helix 7	AA7	A	387	404	Right-handed alpha
Helix 8	AA8	A	413	417	Right-handed 310
Helix 9	AA9	A	452	471	Right-handed alpha
Helix 10	AB1	A	492	497	Right-handed alpha
Helix 11	AB2	A	497	506	Right-handed alpha
Helix 12	AB3	A	507	510	Right-handed 310
Helix 13	AB4	A	511	526	Right-handed alpha
Helix 14	AB5	A	527	536	Right-handed alpha
Helix 15	AB6	A	541	548	Right-handed alpha
Helix 16	AB7	A	555	585	Right-handed alpha
Helix 17	AB8	A	601	610	Right-handed alpha
Helix 18	AB9	A	631	636	Right-handed alpha
Helix 19	AC1	A	663	680	Right-handed alpha
Helix 20	AC2	A	719	738	Right-handed alpha
Helix 21	AC3	B	130	134	Right-handed 310
Helix 22	AC4	B	215	231	Right-handed alpha
Helix 23	AC5	B	332	337	Right-handed alpha
Helix 24	AC6	B	347	351	Right-handed 310
Helix 25	AC7	B	371	382	Right-handed alpha
Helix 26	AC8	B	383	386	Right-handed 310
Helix 27	AC9	B	387	404	Right-handed alpha
Helix 28	AD1	B	413	417	Right-handed 310
Helix 29	AD2	B	452	471	Right-handed alpha
Helix 30	AD3	B	492	497	Right-handed alpha
Helix 31	AD4	B	497	505	Right-handed alpha
Helix 32	AD5	B	511	519	Right-handed alpha
Helix 33	AD6	B	555	585	Right-handed alpha
Helix 34	AD7	B	601	612	Right-handed alpha
Helix 35	AD8	B	631	636	Right-handed alpha
Helix 36	AD9	B	663	680	Right-handed alpha
Helix 37	AE1	B	719	739	Right-handed alpha

There are 17 sheets in PDB entry 5Z6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	174	185	anti-parallel
Strand 3	A	39	44	anti-parallel
Strand 4	A	31	36	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	174	185	anti-parallel
Strand 3	A	70	78	anti-parallel
Strand 4	A	110	117	anti-parallel
Strand 5	A	143	145	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	160	168	anti-parallel
Strand 4	A	84	92	anti-parallel
Strand 5	A	97	104	anti-parallel
Strand 6	A	147	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	274	275	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	684	689	parallel
Strand 3	A	639	643	parallel
Strand 4	A	615	618	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	363	370	anti-parallel
Strand 3	A	297	300	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	363	370	anti-parallel
Strand 3	A	353	359	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	476	481	parallel
Strand 3	A	589	590	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	437	first strand
Strand 2	A	447	448	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	174	185	anti-parallel
Strand 3	B	39	44	anti-parallel
Strand 4	B	31	36	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	174	185	anti-parallel
Strand 3	B	70	78	anti-parallel
Strand 4	B	110	115	anti-parallel
Strand 5	B	143	145	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	160	168	anti-parallel
Strand 4	B	84	92	anti-parallel
Strand 5	B	97	104	anti-parallel
Strand 6	B	147	151	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	264	268	anti-parallel
Strand 3	B	274	275	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	684	689	parallel
Strand 3	B	639	643	parallel
Strand 4	B	615	618	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	367	370	anti-parallel
Strand 3	B	353	356	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	428	first strand
Strand 2	B	476	481	parallel
Strand 3	B	589	590	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	447	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z6P