Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z78 entry

There are 3 chains in PDB entry 5Z78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 7LEU 203
A
 MET 5GLU 204
C
 HIS 1482GLY 1603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5Z78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
13 20Right-handed alpha
Helix 2
AA2
B
41 43Right-handed 310
Helix 3
AA3
B
73 86Right-handed alpha
Helix 4
AA4
B
92 94Right-handed 310
Helix 5
AA5
B
118 131Right-handed alpha
Helix 6
AA6
B
156 162Right-handed alpha
Helix 7
AA7
B
166 180Right-handed alpha
Helix 8
AA8
B
184 203Right-handed alpha
Helix 9
AA9
A
13 19Right-handed alpha
Helix 10
AB1
A
41 43Right-handed 310
Helix 11
AB2
A
73 82Right-handed alpha
Helix 12
AB3
A
92 94Right-handed 310
Helix 13
AB4
A
118 131Right-handed alpha
Helix 14
AB5
A
156 162Right-handed alpha
Helix 15
AB6
A
166 180Right-handed alpha
Helix 16
AB7
A
184 203Right-handed alpha
Helix 17
AB8
C
1589 1595Right-handed alpha
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There are 7 sheets in PDB entry 5Z78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
96 101anti-parallel
Strand 3
B
108 117anti-parallel
Strand 4
B
25 40parallel
Strand 5
B
44 55anti-parallel
Strand 6
B
64 67first strand
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
44 55anti-parallel
Strand 3
B
25 40anti-parallel
Strand 4
B
139 145first strand
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
96 101anti-parallel
Strand 3
A
108 117anti-parallel
Strand 4
A
25 40parallel
Strand 5
A
44 55anti-parallel
Strand 6
A
64 67first strand
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
44 55anti-parallel
Strand 3
A
25 40anti-parallel
Strand 4
A
139 145first strand
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1524 1528first strand
Strand 2
C
1514 1519anti-parallel
Strand 3
C
1501 1511anti-parallel
Strand 4
C
1490 1494anti-parallel
Strand 5
C
1532 1533anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1553 1557first strand
Strand 2
C
1543 1547anti-parallel
Strand 3
C
1586 1587anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1561 1564first strand
Strand 2
C
1567 1570anti-parallel
Strand 3
C
1581 1582anti-parallel
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