Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z79 entry

There are 3 chains in PDB entry 5Z79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	GLN 716
B	PRO 11	PRO 717
C	THR 10	TYR 102

There are144 helices in PDB entry 5Z79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	42	Right-handed alpha
Helix 2	AA2	A	82	89	Right-handed 310
Helix 3	AA3	A	104	112	Right-handed alpha
Helix 4	AA4	A	125	147	Right-handed alpha
Helix 5	AA5	A	173	189	Right-handed alpha
Helix 6	AA6	A	226	236	Right-handed alpha
Helix 7	AA7	A	248	253	Right-handed alpha
Helix 8	AA8	A	254	259	Right-handed 310
Helix 9	AA9	A	272	283	Right-handed alpha
Helix 10	AB1	A	294	311	Right-handed alpha
Helix 11	AB2	A	356	370	Right-handed alpha
Helix 12	AB3	A	393	419	Right-handed alpha
Helix 13	AB4	A	436	448	Right-handed alpha
Helix 14	AB5	A	457	467	Right-handed alpha
Helix 15	AB6	A	482	488	Right-handed 310
Helix 16	AB7	A	509	513	Right-handed 310
Helix 17	AB8	A	518	537	Right-handed alpha
Helix 18	AB9	A	540	542	Right-handed 310
Helix 19	AC1	A	555	565	Right-handed alpha
Helix 20	AC2	A	566	570	Right-handed 310
Helix 21	AC3	A	584	588	Right-handed 310
Helix 22	AC4	A	670	692	Right-handed alpha
Helix 23	AC5	A	700	715	Right-handed alpha
Helix 24	AC6	B	26	42	Right-handed alpha
Helix 25	AC7	B	85	89	Right-handed 310
Helix 26	AC8	B	104	112	Right-handed alpha
Helix 27	AC9	B	125	145	Right-handed alpha
Helix 28	AD1	B	173	189	Right-handed alpha
Helix 29	AD2	B	226	235	Right-handed alpha
Helix 30	AD3	B	248	255	Right-handed alpha
Helix 31	AD4	B	272	283	Right-handed alpha
Helix 32	AD5	B	294	310	Right-handed alpha
Helix 33	AD6	B	313	318	Right-handed alpha
Helix 34	AD7	B	356	371	Right-handed alpha
Helix 35	AD8	B	393	418	Right-handed alpha
Helix 36	AD9	B	436	445	Right-handed alpha
Helix 37	AE1	B	457	467	Right-handed alpha
Helix 38	AE2	B	482	488	Right-handed 310
Helix 39	AE3	B	509	513	Right-handed 310
Helix 40	AE4	B	518	537	Right-handed alpha
Helix 41	AE5	B	540	542	Right-handed 310
Helix 42	AE6	B	555	565	Right-handed alpha
Helix 43	AE7	B	566	570	Right-handed 310
Helix 44	AE8	B	582	587	Right-handed alpha
Helix 45	AE9	B	673	692	Right-handed alpha
Helix 46	AF1	B	700	715	Right-handed alpha
Helix 47	AF2	C	26	42	Right-handed alpha
Helix 48	AF3	C	81	86	Right-handed alpha
Helix 49	AF4	C	87	89	Right-handed 310
Helix 50	AF5	C	104	112	Right-handed alpha
Helix 51	AF6	C	125	150	Right-handed alpha
Helix 52	AF7	C	173	189	Right-handed alpha
Helix 53	AF8	C	226	238	Right-handed alpha
Helix 54	AF9	C	248	255	Right-handed alpha
Helix 55	AG1	C	256	259	Right-handed 310
Helix 56	AG2	C	272	283	Right-handed alpha
Helix 57	AG3	C	294	311	Right-handed alpha
Helix 58	AG4	C	313	318	Right-handed alpha
Helix 59	AG5	C	356	370	Right-handed alpha
Helix 60	AG6	C	393	419	Right-handed alpha
Helix 61	AG7	C	436	448	Right-handed alpha
Helix 62	AG8	C	457	467	Right-handed alpha
Helix 63	AG9	C	482	488	Right-handed 310
Helix 64	AH1	C	509	513	Right-handed 310
Helix 65	AH2	C	518	537	Right-handed alpha
Helix 66	AH3	C	540	542	Right-handed 310
Helix 67	AH4	C	555	565	Right-handed alpha
Helix 68	AH5	C	566	570	Right-handed 310
Helix 69	AH6	C	582	587	Right-handed alpha
Helix 70	AH7	C	670	691	Right-handed alpha
Helix 71	AH8	C	700	715	Right-handed alpha
Helix 72	AH9	D	26	42	Right-handed alpha
Helix 73	AI1	D	81	86	Right-handed alpha
Helix 74	AI2	D	87	89	Right-handed 310
Helix 75	AI3	D	104	112	Right-handed alpha
Helix 76	AI4	D	125	150	Right-handed alpha
Helix 77	AI5	D	173	188	Right-handed alpha
Helix 78	AI6	D	226	237	Right-handed alpha
Helix 79	AI7	D	248	255	Right-handed alpha
Helix 80	AI8	D	256	259	Right-handed 310
Helix 81	AI9	D	272	281	Right-handed alpha
Helix 82	AJ1	D	294	308	Right-handed alpha
Helix 83	AJ2	D	313	317	Right-handed 310
Helix 84	AJ3	D	356	370	Right-handed alpha
Helix 85	AJ4	D	394	418	Right-handed alpha
Helix 86	AJ5	D	437	447	Right-handed alpha
Helix 87	AJ6	D	457	467	Right-handed alpha
Helix 88	AJ7	D	482	488	Right-handed 310
Helix 89	AJ8	D	509	513	Right-handed 310
Helix 90	AJ9	D	518	537	Right-handed alpha
Helix 91	AK1	D	540	542	Right-handed 310
Helix 92	AK2	D	555	565	Right-handed alpha
Helix 93	AK3	D	566	570	Right-handed 310
Helix 94	AK4	D	584	588	Right-handed 310
Helix 95	AK5	D	672	691	Right-handed alpha
Helix 96	AK6	D	700	715	Right-handed alpha
Helix 97	AK7	E	26	42	Right-handed alpha
Helix 98	AK8	E	81	86	Right-handed alpha
Helix 99	AK9	E	87	89	Right-handed 310
Helix 100	AL1	E	104	111	Right-handed alpha
Helix 101	AL2	E	125	147	Right-handed alpha
Helix 102	AL3	E	173	189	Right-handed alpha
Helix 103	AL4	E	226	238	Right-handed alpha
Helix 104	AL5	E	248	254	Right-handed alpha
Helix 105	AL6	E	255	259	Right-handed 310
Helix 106	AL7	E	272	280	Right-handed alpha
Helix 107	AL8	E	294	310	Right-handed alpha
Helix 108	AL9	E	313	317	Right-handed 310
Helix 109	AM1	E	356	371	Right-handed alpha
Helix 110	AM2	E	393	418	Right-handed alpha
Helix 111	AM3	E	436	447	Right-handed alpha
Helix 112	AM4	E	457	467	Right-handed alpha
Helix 113	AM5	E	482	488	Right-handed 310
Helix 114	AM6	E	509	513	Right-handed 310
Helix 115	AM7	E	518	537	Right-handed alpha
Helix 116	AM8	E	540	542	Right-handed 310
Helix 117	AM9	E	555	565	Right-handed alpha
Helix 118	AN1	E	566	570	Right-handed 310
Helix 119	AN2	E	581	587	Right-handed alpha
Helix 120	AN3	E	670	692	Right-handed alpha
Helix 121	AN4	E	700	715	Right-handed alpha
Helix 122	AN5	F	26	42	Right-handed alpha
Helix 123	AN6	F	81	89	Right-handed alpha
Helix 124	AN7	F	104	112	Right-handed alpha
Helix 125	AN8	F	125	147	Right-handed alpha
Helix 126	AN9	F	173	188	Right-handed alpha
Helix 127	AO1	F	226	238	Right-handed alpha
Helix 128	AO2	F	248	255	Right-handed alpha
Helix 129	AO3	F	256	259	Right-handed 310
Helix 130	AO4	F	272	283	Right-handed alpha
Helix 131	AO5	F	294	310	Right-handed alpha
Helix 132	AO6	F	356	370	Right-handed alpha
Helix 133	AO7	F	393	418	Right-handed alpha
Helix 134	AO8	F	438	447	Right-handed alpha
Helix 135	AO9	F	457	467	Right-handed alpha
Helix 136	AP1	F	482	488	Right-handed 310
Helix 137	AP2	F	509	513	Right-handed 310
Helix 138	AP3	F	518	537	Right-handed alpha
Helix 139	AP4	F	540	542	Right-handed 310
Helix 140	AP5	F	555	565	Right-handed alpha
Helix 141	AP6	F	566	570	Right-handed 310
Helix 142	AP7	F	582	587	Right-handed alpha
Helix 143	AP8	F	672	691	Right-handed alpha
Helix 144	AP9	F	700	715	Right-handed alpha

There are 31 sheets in PDB entry 5Z79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	160	169	anti-parallel
Strand 3	A	13	21	anti-parallel
Strand 4	A	207	213	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	160	169	anti-parallel
Strand 3	A	51	54	anti-parallel
Strand 4	A	319	323	anti-parallel
Strand 5	A	328	330	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	262	264	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	547	first strand
Strand 2	A	497	501	parallel
Strand 3	A	472	475	parallel
Strand 4	A	450	454	parallel
Strand 5	A	374	378	parallel
Strand 6	A	336	342	parallel
Strand 7	A	695	698	parallel
Strand 8	A	575	576	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	494	495	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	160	169	anti-parallel
Strand 3	B	15	21	anti-parallel
Strand 4	B	207	213	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	160	169	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	319	323	anti-parallel
Strand 5	B	328	330	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	262	264	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	547	first strand
Strand 2	B	497	501	parallel
Strand 3	B	472	476	parallel
Strand 4	B	450	454	parallel
Strand 5	B	374	378	parallel
Strand 6	B	336	342	parallel
Strand 7	B	695	698	parallel
Strand 8	B	575	576	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	494	495	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	160	169	anti-parallel
Strand 3	C	13	21	anti-parallel
Strand 4	C	207	213	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	160	169	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	319	322	anti-parallel
Strand 5	C	329	330	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	262	264	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	547	first strand
Strand 2	C	497	501	parallel
Strand 3	C	472	475	parallel
Strand 4	C	450	454	parallel
Strand 5	C	374	378	parallel
Strand 6	C	336	342	parallel
Strand 7	C	695	698	parallel
Strand 8	C	575	577	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	494	495	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	160	169	anti-parallel
Strand 3	D	13	21	anti-parallel
Strand 4	D	207	213	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	160	169	anti-parallel
Strand 3	D	51	54	anti-parallel
Strand 4	D	319	323	anti-parallel
Strand 5	D	328	330	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	238	239	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	220	first strand
Strand 2	D	262	264	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	547	first strand
Strand 2	D	497	501	parallel
Strand 3	D	472	475	parallel
Strand 4	D	450	454	parallel
Strand 5	D	374	378	parallel
Strand 6	D	336	342	parallel
Strand 7	D	695	698	parallel
Strand 8	D	575	576	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	491	first strand
Strand 2	D	494	495	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	48	first strand
Strand 2	E	160	169	anti-parallel
Strand 3	E	13	21	anti-parallel
Strand 4	E	207	213	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	48	first strand
Strand 2	E	160	169	anti-parallel
Strand 3	E	51	54	anti-parallel
Strand 4	E	319	322	anti-parallel
Strand 5	E	329	330	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	220	first strand
Strand 2	E	262	264	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	544	547	first strand
Strand 2	E	497	501	parallel
Strand 3	E	472	475	parallel
Strand 4	E	450	454	parallel
Strand 5	E	374	378	parallel
Strand 6	E	336	342	parallel
Strand 7	E	695	698	parallel
Strand 8	E	575	576	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	490	491	first strand
Strand 2	E	494	495	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	160	169	anti-parallel
Strand 3	F	13	21	anti-parallel
Strand 4	F	207	213	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	160	169	anti-parallel
Strand 3	F	51	54	anti-parallel
Strand 4	F	319	323	anti-parallel
Strand 5	F	328	330	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	220	first strand
Strand 2	F	262	264	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	544	547	first strand
Strand 2	F	497	501	parallel
Strand 3	F	472	475	parallel
Strand 4	F	450	454	parallel
Strand 5	F	374	378	parallel
Strand 6	F	336	342	parallel
Strand 7	F	695	698	parallel
Strand 8	F	575	577	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	491	first strand
Strand 2	F	494	495	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z79

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z79