Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z7D entry

There are 7 chains in PDB entry 5Z7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 221	ILE 615
B	GLY 221	ALA 617
C	GLY 221	ASN 616
I	C 1	C 16
J	G 1	G 16
K	C 1	C 16
L	G 1	G 16

There are 27 helices in PDB entry 5Z7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	270	274	Right-handed 310
Helix 2	AA2	A	307	311	Right-handed 310
Helix 3	AA3	A	315	324	Right-handed alpha
Helix 4	AA4	A	327	332	Right-handed alpha
Helix 5	AA5	A	374	376	Right-handed 310
Helix 6	AA6	A	472	478	Right-handed 310
Helix 7	AA7	A	501	503	Right-handed 310
Helix 8	AA8	A	517	525	Right-handed alpha
Helix 9	AA9	A	529	534	Right-handed alpha
Helix 10	AB1	A	574	580	Right-handed 310
Helix 11	AB2	B	270	275	Right-handed 310
Helix 12	AB3	B	307	311	Right-handed 310
Helix 13	AB4	B	315	323	Right-handed alpha
Helix 14	AB5	B	327	332	Right-handed alpha
Helix 15	AB6	B	472	477	Right-handed 310
Helix 16	AB7	B	501	505	Right-handed 310
Helix 17	AB8	B	517	525	Right-handed alpha
Helix 18	AB9	B	529	535	Right-handed alpha
Helix 19	AC1	B	576	580	Right-handed 310
Helix 20	AC2	C	270	274	Right-handed 310
Helix 21	AC3	C	318	323	Right-handed alpha
Helix 22	AC4	C	327	332	Right-handed alpha
Helix 23	AC5	C	472	478	Right-handed 310
Helix 24	AC6	C	501	503	Right-handed 310
Helix 25	AC7	C	518	525	Right-handed alpha
Helix 26	AC8	C	529	534	Right-handed alpha
Helix 27	AC9	C	576	580	Right-handed 310

There are 23 sheets in PDB entry 5Z7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	288	291	anti-parallel
Strand 3	A	294	297	anti-parallel
Strand 4	A	263	268	parallel
Strand 5	A	249	258	anti-parallel
Strand 6	A	240	243	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	288	291	anti-parallel
Strand 3	A	294	297	anti-parallel
Strand 4	A	263	268	parallel
Strand 5	A	249	258	anti-parallel
Strand 6	A	229	236	anti-parallel
Strand 7	A	282	286	anti-parallel
Strand 8	A	302	305	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	385	396	anti-parallel
Strand 3	A	399	403	anti-parallel
Strand 4	A	365	372	parallel
Strand 5	A	355	362	anti-parallel
Strand 6	A	340	351	anti-parallel
Strand 7	A	385	396	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	447	first strand
Strand 2	A	452	460	anti-parallel
Strand 3	A	465	470	anti-parallel
Strand 4	A	496	499	parallel
Strand 5	A	491	493	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	447	first strand
Strand 2	A	452	460	anti-parallel
Strand 3	A	435	440	anti-parallel
Strand 4	A	484	487	anti-parallel
Strand 5	A	505	506	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	614	first strand
Strand 2	A	587	598	anti-parallel
Strand 3	A	601	605	anti-parallel
Strand 4	A	568	573	parallel
Strand 5	A	557	563	anti-parallel
Strand 6	A	541	554	anti-parallel
Strand 7	A	587	598	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	288	291	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	263	268	parallel
Strand 5	B	249	258	anti-parallel
Strand 6	B	240	243	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	288	291	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	263	268	parallel
Strand 5	B	249	258	anti-parallel
Strand 6	B	229	236	anti-parallel
Strand 7	B	282	286	anti-parallel
Strand 8	B	302	305	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	412	first strand
Strand 2	B	385	396	anti-parallel
Strand 3	B	399	403	anti-parallel
Strand 4	B	366	370	parallel
Strand 5	B	356	361	anti-parallel
Strand 6	B	339	351	anti-parallel
Strand 7	B	385	396	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	487	488	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	452	460	anti-parallel
Strand 3	B	444	447	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	452	460	anti-parallel
Strand 3	B	465	470	anti-parallel
Strand 4	B	496	499	parallel
Strand 5	B	491	493	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	557	564	anti-parallel
Strand 3	B	542	554	anti-parallel
Strand 4	B	587	598	anti-parallel
Strand 5	B	611	615	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	557	564	anti-parallel
Strand 3	B	570	574	anti-parallel
Strand 4	B	601	605	parallel
Strand 5	B	587	598	anti-parallel
Strand 6	B	611	615	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	294	297	anti-parallel
Strand 4	C	263	268	parallel
Strand 5	C	251	258	anti-parallel
Strand 6	C	235	236	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	294	297	anti-parallel
Strand 4	C	263	268	parallel
Strand 5	C	251	258	anti-parallel
Strand 6	C	240	241	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	232	first strand
Strand 2	C	282	286	anti-parallel
Strand 3	C	302	305	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	351	first strand
Strand 2	C	356	362	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	399	413	parallel
Strand 5	C	385	396	anti-parallel
Strand 6	C	339	351	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	447	first strand
Strand 2	C	452	460	anti-parallel
Strand 3	C	465	470	anti-parallel
Strand 4	C	496	499	parallel
Strand 5	C	491	493	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	447	first strand
Strand 2	C	452	460	anti-parallel
Strand 3	C	435	440	anti-parallel
Strand 4	C	484	487	anti-parallel
Strand 5	C	505	506	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	554	first strand
Strand 2	C	557	563	anti-parallel
Strand 3	C	568	574	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	554	first strand
Strand 2	C	557	563	anti-parallel
Strand 3	C	542	548	anti-parallel
Strand 4	C	587	593	anti-parallel
Strand 5	C	611	614	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	596	597	first strand
Strand 2	C	602	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z7D