Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z7J entry

There are 8 chains in PDB entry 5Z7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LYS 266
B	THR 4	LYS 266
C	ALA 3	LYS 266
D	ALA 3	LYS 266
E	ALA 3	LEU 265
F	THR 4	LYS 266
G	ALA 3	LEU 265
H	THR 4	LYS 266

There are121 helices in PDB entry 5Z7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	41	Right-handed 310
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	71	76	Right-handed 310
Helix 5	AA5	A	79	94	Right-handed alpha
Helix 6	AA6	A	105	118	Right-handed alpha
Helix 7	AA7	A	135	139	Right-handed 310
Helix 8	AA8	A	140	144	Right-handed 310
Helix 9	AA9	A	145	160	Right-handed alpha
Helix 10	AB1	A	163	169	Right-handed alpha
Helix 11	AB2	A	171	189	Right-handed alpha
Helix 12	AB3	A	193	197	Right-handed 310
Helix 13	AB4	A	200	204	Right-handed 310
Helix 14	AB5	A	218	232	Right-handed alpha
Helix 15	AB6	A	244	249	Right-handed alpha
Helix 16	AB7	A	249	263	Right-handed alpha
Helix 17	AB8	B	38	41	Right-handed 310
Helix 18	AB9	B	42	51	Right-handed alpha
Helix 19	AC1	B	64	68	Right-handed 310
Helix 20	AC2	B	71	76	Right-handed 310
Helix 21	AC3	B	79	94	Right-handed alpha
Helix 22	AC4	B	105	118	Right-handed alpha
Helix 23	AC5	B	135	139	Right-handed 310
Helix 24	AC6	B	140	144	Right-handed 310
Helix 25	AC7	B	145	160	Right-handed alpha
Helix 26	AC8	B	163	169	Right-handed alpha
Helix 27	AC9	B	171	189	Right-handed alpha
Helix 28	AD1	B	193	197	Right-handed 310
Helix 29	AD2	B	200	204	Right-handed 310
Helix 30	AD3	B	222	232	Right-handed alpha
Helix 31	AD4	B	244	249	Right-handed alpha
Helix 32	AD5	B	249	263	Right-handed alpha
Helix 33	AD6	C	38	41	Right-handed 310
Helix 34	AD7	C	42	51	Right-handed alpha
Helix 35	AD8	C	64	68	Right-handed 310
Helix 36	AD9	C	71	76	Right-handed 310
Helix 37	AE1	C	79	94	Right-handed alpha
Helix 38	AE2	C	105	118	Right-handed alpha
Helix 39	AE3	C	135	139	Right-handed 310
Helix 40	AE4	C	145	160	Right-handed alpha
Helix 41	AE5	C	163	169	Right-handed alpha
Helix 42	AE6	C	171	189	Right-handed alpha
Helix 43	AE7	C	193	197	Right-handed 310
Helix 44	AE8	C	200	204	Right-handed 310
Helix 45	AE9	C	218	221	Right-handed 310
Helix 46	AF1	C	222	233	Right-handed alpha
Helix 47	AF2	C	244	249	Right-handed alpha
Helix 48	AF3	C	249	263	Right-handed alpha
Helix 49	AF4	D	38	41	Right-handed 310
Helix 50	AF5	D	42	51	Right-handed alpha
Helix 51	AF6	D	64	68	Right-handed 310
Helix 52	AF7	D	71	76	Right-handed 310
Helix 53	AF8	D	79	94	Right-handed alpha
Helix 54	AF9	D	105	118	Right-handed alpha
Helix 55	AG1	D	135	139	Right-handed 310
Helix 56	AG2	D	145	160	Right-handed alpha
Helix 57	AG3	D	163	169	Right-handed alpha
Helix 58	AG4	D	171	189	Right-handed alpha
Helix 59	AG5	D	193	197	Right-handed 310
Helix 60	AG6	D	200	204	Right-handed 310
Helix 61	AG7	D	218	221	Right-handed 310
Helix 62	AG8	D	222	233	Right-handed alpha
Helix 63	AG9	D	244	249	Right-handed alpha
Helix 64	AH1	D	249	263	Right-handed alpha
Helix 65	AH2	E	38	41	Right-handed 310
Helix 66	AH3	E	42	51	Right-handed alpha
Helix 67	AH4	E	64	68	Right-handed 310
Helix 68	AH5	E	71	76	Right-handed 310
Helix 69	AH6	E	79	94	Right-handed alpha
Helix 70	AH7	E	105	118	Right-handed alpha
Helix 71	AH8	E	135	139	Right-handed 310
Helix 72	AH9	E	145	160	Right-handed alpha
Helix 73	AI1	E	163	169	Right-handed alpha
Helix 74	AI2	E	171	189	Right-handed alpha
Helix 75	AI3	E	193	197	Right-handed 310
Helix 76	AI4	E	200	204	Right-handed 310
Helix 77	AI5	E	222	233	Right-handed alpha
Helix 78	AI6	E	244	249	Right-handed alpha
Helix 79	AI7	E	249	263	Right-handed alpha
Helix 80	AI8	F	38	41	Right-handed 310
Helix 81	AI9	F	42	51	Right-handed alpha
Helix 82	AJ1	F	64	68	Right-handed 310
Helix 83	AJ2	F	71	76	Right-handed 310
Helix 84	AJ3	F	79	94	Right-handed alpha
Helix 85	AJ4	F	105	118	Right-handed alpha
Helix 86	AJ5	F	135	139	Right-handed 310
Helix 87	AJ6	F	145	160	Right-handed alpha
Helix 88	AJ7	F	163	169	Right-handed alpha
Helix 89	AJ8	F	171	189	Right-handed alpha
Helix 90	AJ9	F	193	197	Right-handed 310
Helix 91	AK1	F	222	233	Right-handed alpha
Helix 92	AK2	F	244	249	Right-handed alpha
Helix 93	AK3	F	249	263	Right-handed alpha
Helix 94	AK4	G	38	41	Right-handed 310
Helix 95	AK5	G	42	51	Right-handed alpha
Helix 96	AK6	G	64	68	Right-handed 310
Helix 97	AK7	G	71	76	Right-handed 310
Helix 98	AK8	G	79	94	Right-handed alpha
Helix 99	AK9	G	105	118	Right-handed alpha
Helix 100	AL1	G	145	160	Right-handed alpha
Helix 101	AL2	G	163	169	Right-handed alpha
Helix 102	AL3	G	171	189	Right-handed alpha
Helix 103	AL4	G	193	197	Right-handed 310
Helix 104	AL5	G	200	204	Right-handed 310
Helix 105	AL6	G	222	233	Right-handed alpha
Helix 106	AL7	G	244	249	Right-handed alpha
Helix 107	AL8	G	249	263	Right-handed alpha
Helix 108	AL9	H	38	41	Right-handed 310
Helix 109	AM1	H	42	51	Right-handed alpha
Helix 110	AM2	H	64	68	Right-handed 310
Helix 111	AM3	H	71	76	Right-handed 310
Helix 112	AM4	H	79	94	Right-handed alpha
Helix 113	AM5	H	105	118	Right-handed alpha
Helix 114	AM6	H	145	160	Right-handed alpha
Helix 115	AM7	H	163	169	Right-handed alpha
Helix 116	AM8	H	171	189	Right-handed alpha
Helix 117	AM9	H	193	197	Right-handed 310
Helix 118	AN1	H	200	205	Right-handed alpha
Helix 119	AN2	H	222	233	Right-handed alpha
Helix 120	AN3	H	244	249	Right-handed alpha
Helix 121	AN4	H	249	263	Right-handed alpha

There are 16 sheets in PDB entry 5Z7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	28	32	parallel
Strand 5	A	99	104	parallel
Strand 6	A	122	128	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	235	239	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	55	59	anti-parallel
Strand 4	B	28	32	parallel
Strand 5	B	99	104	parallel
Strand 6	B	122	128	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	214	first strand
Strand 2	B	235	239	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	55	59	anti-parallel
Strand 4	C	28	32	parallel
Strand 5	C	99	104	parallel
Strand 6	C	122	128	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	214	first strand
Strand 2	C	235	239	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	11	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	28	32	parallel
Strand 5	D	99	104	parallel
Strand 6	D	122	128	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	214	first strand
Strand 2	D	235	239	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	11	first strand
Strand 2	E	17	23	anti-parallel
Strand 3	E	55	59	anti-parallel
Strand 4	E	28	32	parallel
Strand 5	E	99	104	parallel
Strand 6	E	122	128	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	214	first strand
Strand 2	E	235	239	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	11	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	55	59	anti-parallel
Strand 4	F	28	32	parallel
Strand 5	F	99	104	parallel
Strand 6	F	122	128	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	214	first strand
Strand 2	F	235	239	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	55	59	anti-parallel
Strand 4	G	28	32	parallel
Strand 5	G	99	104	parallel
Strand 6	G	122	128	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	214	first strand
Strand 2	G	235	239	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	55	59	anti-parallel
Strand 4	H	28	32	parallel
Strand 5	H	99	104	parallel
Strand 6	H	122	128	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	210	214	first strand
Strand 2	H	235	239	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z7J