Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z87 entry

There are 2 chains in PDB entry 5Z87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 30	VAL 785
B	GLN 31	VAL 785

There are 60 helices in PDB entry 5Z87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	52	Right-handed alpha
Helix 2	AA2	A	55	62	Right-handed alpha
Helix 3	AA3	A	67	74	Right-handed alpha
Helix 4	AA4	A	74	82	Right-handed alpha
Helix 5	AA5	A	83	88	Right-handed 310
Helix 6	AA6	A	100	117	Right-handed alpha
Helix 7	AA7	A	145	151	Right-handed alpha
Helix 8	AA8	A	154	172	Right-handed alpha
Helix 9	AA9	A	192	196	Right-handed 310
Helix 10	AB1	A	200	217	Right-handed alpha
Helix 11	AB2	A	237	245	Right-handed 310
Helix 12	AB3	A	253	260	Right-handed alpha
Helix 13	AB4	A	262	271	Right-handed alpha
Helix 14	AB5	A	292	297	Right-handed alpha
Helix 15	AB6	A	318	323	Right-handed alpha
Helix 16	AB7	A	329	341	Right-handed alpha
Helix 17	AB8	A	350	353	Right-handed 310
Helix 18	AB9	A	354	361	Right-handed alpha
Helix 19	AC1	A	365	383	Right-handed alpha
Helix 20	AC2	A	392	400	Right-handed alpha
Helix 21	AC3	A	402	417	Right-handed alpha
Helix 22	AC4	A	424	426	Right-handed 310
Helix 23	AC5	A	430	434	Right-handed 310
Helix 24	AC6	A	461	474	Right-handed alpha
Helix 25	AC7	A	507	523	Right-handed alpha
Helix 26	AC8	A	560	570	Right-handed alpha
Helix 27	AC9	A	587	594	Right-handed alpha
Helix 28	AD1	A	606	616	Right-handed alpha
Helix 29	AD2	A	632	636	Right-handed 310
Helix 30	AD3	A	746	751	Right-handed alpha
Helix 31	AD4	B	42	52	Right-handed alpha
Helix 32	AD5	B	55	62	Right-handed alpha
Helix 33	AD6	B	67	74	Right-handed alpha
Helix 34	AD7	B	74	82	Right-handed alpha
Helix 35	AD8	B	83	88	Right-handed 310
Helix 36	AD9	B	100	117	Right-handed alpha
Helix 37	AE1	B	145	151	Right-handed alpha
Helix 38	AE2	B	154	172	Right-handed alpha
Helix 39	AE3	B	192	196	Right-handed 310
Helix 40	AE4	B	200	217	Right-handed alpha
Helix 41	AE5	B	237	245	Right-handed 310
Helix 42	AE6	B	253	260	Right-handed alpha
Helix 43	AE7	B	262	271	Right-handed alpha
Helix 44	AE8	B	292	297	Right-handed alpha
Helix 45	AE9	B	318	323	Right-handed alpha
Helix 46	AF1	B	329	341	Right-handed alpha
Helix 47	AF2	B	350	353	Right-handed 310
Helix 48	AF3	B	354	361	Right-handed alpha
Helix 49	AF4	B	365	383	Right-handed alpha
Helix 50	AF5	B	392	400	Right-handed alpha
Helix 51	AF6	B	402	417	Right-handed alpha
Helix 52	AF7	B	424	426	Right-handed 310
Helix 53	AF8	B	430	434	Right-handed 310
Helix 54	AF9	B	461	474	Right-handed alpha
Helix 55	AG1	B	507	523	Right-handed alpha
Helix 56	AG2	B	560	570	Right-handed alpha
Helix 57	AG3	B	587	594	Right-handed alpha
Helix 58	AG4	B	606	616	Right-handed alpha
Helix 59	AG5	B	632	636	Right-handed 310
Helix 60	AG6	B	746	751	Right-handed alpha

There are 17 sheets in PDB entry 5Z87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	345	346	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	126	129	parallel
Strand 3	A	176	177	parallel
Strand 4	A	229	235	parallel
Strand 5	A	276	279	parallel
Strand 6	A	309	311	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	287	288	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	422	first strand
Strand 2	A	596	601	anti-parallel
Strand 3	A	574	580	parallel
Strand 4	A	527	533	parallel
Strand 5	A	436	440	parallel
Strand 6	A	476	480	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	689	697	anti-parallel
Strand 3	A	677	678	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	689	697	anti-parallel
Strand 3	A	738	745	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	778	784	parallel
Strand 3	A	764	771	anti-parallel
Strand 4	A	703	713	anti-parallel
Strand 5	A	724	733	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	753	first strand
Strand 2	A	759	760	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	345	346	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	B	126	129	parallel
Strand 3	B	176	177	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	276	279	parallel
Strand 3	B	309	311	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	288	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	422	first strand
Strand 2	B	596	599	anti-parallel
Strand 3	B	574	580	parallel
Strand 4	B	527	533	parallel
Strand 5	B	436	440	parallel
Strand 6	B	476	480	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	B	689	697	anti-parallel
Strand 3	B	677	678	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	B	689	697	anti-parallel
Strand 3	B	738	745	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	778	784	parallel
Strand 3	B	764	771	anti-parallel
Strand 4	B	703	713	anti-parallel
Strand 5	B	724	733	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	753	first strand
Strand 2	B	759	760	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z87

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z87