Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z8B entry

There are 2 chains in PDB entry 5Z8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 209
B
 HIS -1GLY 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5Z8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
12 25Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
59 66Right-handed 310
Helix 5
AA5
A
87 100Right-handed alpha
Helix 6
AA6
A
152 154Right-handed 310
Helix 7
AA7
A
156 161Right-handed alpha
Helix 8
AA8
A
166 178Right-handed alpha
Helix 9
AA9
B
9 11Right-handed 310
Helix 10
AB1
B
12 25Right-handed alpha
Helix 11
AB2
B
41 45Right-handed 310
Helix 12
AB3
B
59 66Right-handed 310
Helix 13
AB4
B
87 101Right-handed alpha
Helix 14
AB5
B
152 154Right-handed 310
Helix 15
AB6
B
156 161Right-handed alpha
Helix 16
AB7
B
166 178Right-handed alpha
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There are 7 sheets in PDB entry 5Z8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
29 34parallel
Strand 3
A
2 8parallel
Strand 4
A
74 78parallel
Strand 5
A
146 150anti-parallel
Strand 6
A
104 107anti-parallel
Strand 7
A
181 184parallel
Strand 8
A
137 138anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
193 194anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
141 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
204 205anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
29 34parallel
Strand 3
B
2 8parallel
Strand 4
B
74 79parallel
Strand 5
B
146 150anti-parallel
Strand 6
B
104 107anti-parallel
Strand 7
B
181 184parallel
Strand 8
B
137 139anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
193 194anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
110 114anti-parallel
Strand 3
B
141 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il