Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z8P entry

There is 1 chain in PDB entry 5Z8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ASP 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5Z8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
36 40Right-handed 310
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
65 69Right-handed 310
Helix 6
AA6
A
70 84Right-handed alpha
Helix 7
AA7
A
95 108Right-handed alpha
Helix 8
AA8
A
135 145Right-handed alpha
Helix 9
AA9
A
145 163Right-handed alpha
Helix 10
AB1
A
168 179Right-handed alpha
Helix 11
AB2
A
182 195Right-handed alpha
Helix 12
AB3
A
198 205Right-handed 310
Helix 13
AB4
A
222 232Right-handed alpha
Helix 14
AB5
A
247 252Right-handed alpha
Helix 15
AB6
A
252 266Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Z8P.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
19 23parallel
Strand 4
A
89 94parallel
Strand 5
A
112 118parallel
Strand 6
A
209 216parallel
Strand 7
A
236 244parallel
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