Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z8T entry

There are 3 chains in PDB entry 5Z8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLY 394
B
 ALA 0GLY 394
C
 ALA 0GLY 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5Z8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 6Right-handed alpha
Helix 2
AA2
A
11 39Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
53 57Right-handed 310
Helix 5
AA5
A
60 64Right-handed 310
Helix 6
AA6
A
69 84Right-handed alpha
Helix 7
AA7
A
84 105Right-handed alpha
Helix 8
AA8
A
108 123Right-handed alpha
Helix 9
AA9
A
137 141Right-handed 310
Helix 10
AB1
A
166 170Right-handed 310
Helix 11
AB2
A
193 195Right-handed 310
Helix 12
AB3
A
243 246Right-handed 310
Helix 13
AB4
A
247 271Right-handed alpha
Helix 14
AB5
A
279 282Right-handed 310
Helix 15
AB6
A
283 314Right-handed alpha
Helix 16
AB7
A
315 322Right-handed alpha
Helix 17
AB8
A
322 349Right-handed alpha
Helix 18
AB9
A
350 354Right-handed 310
Helix 19
AC1
A
358 367Right-handed alpha
Helix 20
AC2
A
368 372Right-handed 310
Helix 21
AC3
A
375 394Right-handed alpha
Helix 22
AC4
B
1 6Right-handed alpha
Helix 23
AC5
B
11 39Right-handed alpha
Helix 24
AC6
B
42 52Right-handed alpha
Helix 25
AC7
B
53 57Right-handed 310
Helix 26
AC8
B
60 64Right-handed 310
Helix 27
AC9
B
69 84Right-handed alpha
Helix 28
AD1
B
84 105Right-handed alpha
Helix 29
AD2
B
108 123Right-handed alpha
Helix 30
AD3
B
137 141Right-handed 310
Helix 31
AD4
B
166 170Right-handed 310
Helix 32
AD5
B
193 195Right-handed 310
Helix 33
AD6
B
243 246Right-handed 310
Helix 34
AD7
B
247 271Right-handed alpha
Helix 35
AD8
B
279 282Right-handed 310
Helix 36
AD9
B
283 314Right-handed alpha
Helix 37
AE1
B
315 349Right-handed alpha
Helix 38
AE2
B
350 354Right-handed 310
Helix 39
AE3
B
358 367Right-handed alpha
Helix 40
AE4
B
368 372Right-handed 310
Helix 41
AE5
B
375 394Right-handed alpha
Helix 42
AE6
C
1 6Right-handed alpha
Helix 43
AE7
C
11 39Right-handed alpha
Helix 44
AE8
C
42 52Right-handed alpha
Helix 45
AE9
C
53 57Right-handed 310
Helix 46
AF1
C
60 64Right-handed 310
Helix 47
AF2
C
69 84Right-handed alpha
Helix 48
AF3
C
84 105Right-handed alpha
Helix 49
AF4
C
108 123Right-handed alpha
Helix 50
AF5
C
137 141Right-handed 310
Helix 51
AF6
C
166 170Right-handed 310
Helix 52
AF7
C
193 195Right-handed 310
Helix 53
AF8
C
243 246Right-handed 310
Helix 54
AF9
C
247 271Right-handed alpha
Helix 55
AG1
C
279 282Right-handed 310
Helix 56
AG2
C
283 314Right-handed alpha
Helix 57
AG3
C
315 322Right-handed alpha
Helix 58
AG4
C
322 349Right-handed alpha
Helix 59
AG5
C
350 354Right-handed 310
Helix 60
AG6
C
358 367Right-handed alpha
Helix 61
AG7
C
368 372Right-handed 310
Helix 62
AG8
C
375 394Right-handed alpha
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There are 6 sheets in PDB entry 5Z8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
172 179parallel
Strand 3
A
147 150parallel
Strand 4
A
154 164anti-parallel
Strand 5
A
212 222anti-parallel
Strand 6
A
196 198anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
172 179parallel
Strand 3
A
184 191anti-parallel
Strand 4
A
226 229anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
172 179parallel
Strand 3
B
147 150parallel
Strand 4
B
154 164anti-parallel
Strand 5
B
212 222anti-parallel
Strand 6
B
196 198anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
172 179parallel
Strand 3
B
184 191anti-parallel
Strand 4
B
226 229anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 129first strand
Strand 2
C
172 179parallel
Strand 3
C
147 150parallel
Strand 4
C
154 164anti-parallel
Strand 5
C
212 222anti-parallel
Strand 6
C
196 198anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 129first strand
Strand 2
C
172 179parallel
Strand 3
C
184 191anti-parallel
Strand 4
C
226 229anti-parallel
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