Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z8Y entry

There are 5 chains in PDB entry 5Z8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 34	TRP 361
B	SER 85	VAL 262
C	CYS 34	TRP 361
D	SER 85	VAL 262
E	CYS 34	VAL 272

There are 28 helices in PDB entry 5Z8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	223	226	Right-handed 310
Helix 2	AA2	A	293	298	Right-handed alpha
Helix 3	AA3	A	316	318	Right-handed 310
Helix 4	AA4	A	319	329	Right-handed alpha
Helix 5	AA5	A	342	346	Right-handed 310
Helix 6	AA6	A	349	357	Right-handed alpha
Helix 7	AA7	B	241	247	Right-handed alpha
Helix 8	AA8	C	223	226	Right-handed 310
Helix 9	AA9	C	293	298	Right-handed alpha
Helix 10	AB1	C	316	318	Right-handed 310
Helix 11	AB2	C	319	329	Right-handed alpha
Helix 12	AB3	C	342	346	Right-handed 310
Helix 13	AB4	C	349	357	Right-handed alpha
Helix 14	AB5	D	241	247	Right-handed alpha
Helix 15	AB6	E	223	226	Right-handed 310
Helix 16	AB7	E	293	298	Right-handed alpha
Helix 17	AB8	E	316	318	Right-handed 310
Helix 18	AB9	E	319	329	Right-handed alpha
Helix 19	AC1	E	342	346	Right-handed 310
Helix 20	AC2	E	349	357	Right-handed alpha
Helix 21	AC3	F	241	247	Right-handed alpha
Helix 22	AC4	G	223	226	Right-handed 310
Helix 23	AC5	G	293	298	Right-handed alpha
Helix 24	AC6	G	316	318	Right-handed 310
Helix 25	AC7	G	319	329	Right-handed alpha
Helix 26	AC8	G	342	346	Right-handed 310
Helix 27	AC9	G	349	357	Right-handed alpha
Helix 28	AD1	H	241	247	Right-handed alpha

There are 20 sheets in PDB entry 5Z8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	65	67	parallel
Strand 3	A	89	91	parallel
Strand 4	A	113	115	parallel
Strand 5	A	137	139	parallel
Strand 6	A	161	163	parallel
Strand 7	A	185	187	parallel
Strand 8	A	209	211	parallel
Strand 9	A	233	235	parallel
Strand 10	A	257	259	parallel
Strand 11	A	281	283	parallel
Strand 12	A	305	307	parallel
Strand 13	A	332	333	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	99	100	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	243	245	parallel
Strand 3	A	267	268	parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	142	148	anti-parallel
Strand 4	B	127	135	anti-parallel
Strand 5	B	214	219	anti-parallel
Strand 6	B	90	103	anti-parallel
Strand 7	B	230	237	anti-parallel
Strand 8	B	114	123	anti-parallel
Strand 9	B	178	185	anti-parallel
Strand 10	B	188	192	anti-parallel
Strand 11	B	199	201	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	142	148	anti-parallel
Strand 4	B	127	135	anti-parallel
Strand 5	B	214	219	anti-parallel
Strand 6	B	90	103	anti-parallel
Strand 7	B	254	260	anti-parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	65	67	parallel
Strand 3	C	89	91	parallel
Strand 4	C	113	115	parallel
Strand 5	C	137	139	parallel
Strand 6	C	161	163	parallel
Strand 7	C	185	187	parallel
Strand 8	C	209	211	parallel
Strand 9	C	233	235	parallel
Strand 10	C	257	259	parallel
Strand 11	C	281	283	parallel
Strand 12	C	305	307	parallel
Strand 13	C	332	333	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	99	100	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	243	245	parallel
Strand 3	C	267	268	parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	142	148	anti-parallel
Strand 4	D	127	135	anti-parallel
Strand 5	D	214	219	anti-parallel
Strand 6	D	90	103	anti-parallel
Strand 7	D	230	237	anti-parallel
Strand 8	D	114	123	anti-parallel
Strand 9	D	178	185	anti-parallel
Strand 10	D	188	192	anti-parallel
Strand 11	D	199	201	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	142	148	anti-parallel
Strand 4	D	127	135	anti-parallel
Strand 5	D	214	219	anti-parallel
Strand 6	D	90	103	anti-parallel
Strand 7	D	254	260	anti-parallel

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There are 13 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	65	67	parallel
Strand 3	E	89	91	parallel
Strand 4	E	113	115	parallel
Strand 5	E	137	139	parallel
Strand 6	E	161	163	parallel
Strand 7	E	185	187	parallel
Strand 8	E	209	211	parallel
Strand 9	E	233	235	parallel
Strand 10	E	257	259	parallel
Strand 11	E	281	283	parallel
Strand 12	E	305	307	parallel
Strand 13	E	332	333	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	99	100	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	221	first strand
Strand 2	E	243	245	parallel
Strand 3	E	267	268	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	166	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	142	148	anti-parallel
Strand 4	F	127	135	anti-parallel
Strand 5	F	214	219	anti-parallel
Strand 6	F	90	103	anti-parallel
Strand 7	F	230	237	anti-parallel
Strand 8	F	114	123	anti-parallel
Strand 9	F	178	185	anti-parallel
Strand 10	F	188	192	anti-parallel
Strand 11	F	199	201	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	166	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	142	148	anti-parallel
Strand 4	F	127	135	anti-parallel
Strand 5	F	214	219	anti-parallel
Strand 6	F	90	103	anti-parallel
Strand 7	F	254	260	anti-parallel

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There are 13 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	46	first strand
Strand 2	G	65	67	parallel
Strand 3	G	89	91	parallel
Strand 4	G	113	115	parallel
Strand 5	G	137	139	parallel
Strand 6	G	161	163	parallel
Strand 7	G	185	187	parallel
Strand 8	G	209	211	parallel
Strand 9	G	233	235	parallel
Strand 10	G	257	259	parallel
Strand 11	G	281	283	parallel
Strand 12	G	305	307	parallel
Strand 13	G	332	333	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	99	100	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	221	first strand
Strand 2	G	243	245	parallel
Strand 3	G	267	268	parallel

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There are 11 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	166	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	142	148	anti-parallel
Strand 4	H	127	135	anti-parallel
Strand 5	H	214	219	anti-parallel
Strand 6	H	90	103	anti-parallel
Strand 7	H	230	237	anti-parallel
Strand 8	H	114	123	anti-parallel
Strand 9	H	178	185	anti-parallel
Strand 10	H	188	192	anti-parallel
Strand 11	H	199	201	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	166	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	142	148	anti-parallel
Strand 4	H	127	135	anti-parallel
Strand 5	H	214	219	anti-parallel
Strand 6	H	90	103	anti-parallel
Strand 7	H	254	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z8Y