Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z93 entry

There are 3 chains in PDB entry 5Z93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 122ASP 395
B
 ALA 7ARG 8
B
 SER 10GLY 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5Z93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 134Right-handed alpha
Helix 2
AA2
A
146 153Right-handed 310
Helix 3
AA3
A
161 171Right-handed alpha
Helix 4
AA4
A
175 180Right-handed 310
Helix 5
AA5
A
181 188Right-handed alpha
Helix 6
AA6
A
189 199Right-handed alpha
Helix 7
AA7
A
207 219Right-handed alpha
Helix 8
AA8
A
232 237Right-handed alpha
Helix 9
AA9
A
240 242Right-handed 310
Helix 10
AB1
A
268 274Right-handed alpha
Helix 11
AB2
A
299 303Right-handed 310
Helix 12
AB3
A
304 312Right-handed alpha
Helix 13
AB4
A
327 333Right-handed 310
Helix 14
AB5
A
348 354Right-handed alpha
Helix 15
AB6
A
365 378Right-handed alpha
Helix 16
AB7
A
379 395Right-handed alpha
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There are 3 sheets in PDB entry 5Z93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
222 227parallel
Strand 3
A
140 144parallel
Strand 4
A
314 318parallel
Strand 5
A
340 344parallel
Strand 6
A
359 363parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
287 291anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
B
10 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il