Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z97 entry

There are 4 chains in PDB entry 5Z97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4LYS 266
B
 THR 4LYS 266
C
 THR 4LYS 266
D
 THR 4TYR 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5Z97. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 41Right-handed 310
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
71 75Right-handed 310
Helix 5
AA5
A
79 94Right-handed alpha
Helix 6
AA6
A
105 118Right-handed alpha
Helix 7
AA7
A
135 139Right-handed 310
Helix 8
AA8
A
140 144Right-handed 310
Helix 9
AA9
A
145 160Right-handed alpha
Helix 10
AB1
A
163 169Right-handed alpha
Helix 11
AB2
A
171 189Right-handed alpha
Helix 12
AB3
A
193 197Right-handed 310
Helix 13
AB4
A
200 204Right-handed 310
Helix 14
AB5
A
218 221Right-handed 310
Helix 15
AB6
A
222 233Right-handed alpha
Helix 16
AB7
A
244 249Right-handed alpha
Helix 17
AB8
A
249 263Right-handed alpha
Helix 18
AB9
B
38 41Right-handed 310
Helix 19
AC1
B
42 51Right-handed alpha
Helix 20
AC2
B
64 68Right-handed 310
Helix 21
AC3
B
71 76Right-handed 310
Helix 22
AC4
B
79 94Right-handed alpha
Helix 23
AC5
B
105 118Right-handed alpha
Helix 24
AC6
B
135 139Right-handed 310
Helix 25
AC7
B
140 144Right-handed 310
Helix 26
AC8
B
145 160Right-handed alpha
Helix 27
AC9
B
163 169Right-handed alpha
Helix 28
AD1
B
171 189Right-handed alpha
Helix 29
AD2
B
200 204Right-handed 310
Helix 30
AD3
B
218 221Right-handed 310
Helix 31
AD4
B
222 233Right-handed alpha
Helix 32
AD5
B
244 249Right-handed alpha
Helix 33
AD6
B
249 263Right-handed alpha
Helix 34
AD7
C
38 41Right-handed 310
Helix 35
AD8
C
42 51Right-handed alpha
Helix 36
AD9
C
64 68Right-handed 310
Helix 37
AE1
C
71 76Right-handed 310
Helix 38
AE2
C
79 94Right-handed alpha
Helix 39
AE3
C
105 118Right-handed alpha
Helix 40
AE4
C
135 139Right-handed 310
Helix 41
AE5
C
145 160Right-handed alpha
Helix 42
AE6
C
163 170Right-handed alpha
Helix 43
AE7
C
171 189Right-handed alpha
Helix 44
AE8
C
193 197Right-handed 310
Helix 45
AE9
C
222 230Right-handed alpha
Helix 46
AF1
C
231 233Right-handed 310
Helix 47
AF2
C
244 249Right-handed alpha
Helix 48
AF3
C
249 263Right-handed alpha
Helix 49
AF4
D
38 41Right-handed 310
Helix 50
AF5
D
42 51Right-handed alpha
Helix 51
AF6
D
64 68Right-handed 310
Helix 52
AF7
D
71 76Right-handed 310
Helix 53
AF8
D
79 95Right-handed alpha
Helix 54
AF9
D
105 118Right-handed alpha
Helix 55
AG1
D
135 139Right-handed 310
Helix 56
AG2
D
145 160Right-handed alpha
Helix 57
AG3
D
164 169Right-handed alpha
Helix 58
AG4
D
170 189Right-handed alpha
Helix 59
AG5
D
222 233Right-handed alpha
Helix 60
AG6
D
244 249Right-handed alpha
Helix 61
AG7
D
249 263Right-handed alpha
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There are 8 sheets in PDB entry 5Z97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
28 32parallel
Strand 5
A
99 104parallel
Strand 6
A
122 128parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
235 239parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
28 32parallel
Strand 5
B
99 104parallel
Strand 6
B
122 128parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
235 239parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
55 59anti-parallel
Strand 4
C
28 32parallel
Strand 5
C
99 104parallel
Strand 6
C
122 128parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 214first strand
Strand 2
C
235 239parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
55 60anti-parallel
Strand 4
D
28 32parallel
Strand 5
D
99 104parallel
Strand 6
D
122 128parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 214first strand
Strand 2
D
237 239parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il