Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z99 entry

There is 1 chain in PDB entry 5Z99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3THR 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5Z99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 39Right-handed alpha
Helix 2
AA2
A
86 99Right-handed alpha
Helix 3
AA3
A
100 103Right-handed 310
Helix 4
AA4
A
106 110Right-handed 310
Helix 5
AA5
A
134 139Right-handed alpha
Helix 6
AA6
A
140 142Right-handed 310
Helix 7
AA7
A
146 151Right-handed alpha
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
204 214Right-handed alpha
Helix 10
AB1
A
224 226Right-handed 310
Helix 11
AB2
A
227 232Right-handed alpha
Helix 12
AB3
A
259 269Right-handed alpha
Helix 13
AB4
A
271 279Right-handed alpha
Helix 14
AB5
A
308 319Right-handed alpha
Helix 15
AB6
A
333 349Right-handed alpha
Helix 16
AB7
A
361 369Right-handed alpha
Helix 17
AB8
A
383 388Right-handed 310
Helix 18
AB9
A
390 400Right-handed alpha
Helix 19
AC1
A
414 430Right-handed alpha
Helix 20
AC2
A
433 449Right-handed alpha
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There are 5 sheets in PDB entry 5Z99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 173first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
8 13parallel
Strand 5
A
219 220parallel
Strand 6
A
459 463anti-parallel
Strand 7
A
236 240anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
52 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
113 118anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
451 457anti-parallel
Strand 3
A
245 250anti-parallel
Strand 4
A
377 382anti-parallel
Strand 5
A
324 331parallel
Strand 6
A
353 360parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
485 486anti-parallel
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