Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z9A entry

There are 2 chains in PDB entry 5Z9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 349
B
 MET 1GLN 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5Z9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 47Right-handed alpha
Helix 2
AA2
A
132 148Right-handed alpha
Helix 3
AA3
A
169 175Right-handed 310
Helix 4
AA4
A
181 183Right-handed 310
Helix 5
AA5
A
184 199Right-handed alpha
Helix 6
AA6
A
224 235Right-handed alpha
Helix 7
AA7
A
327 349Right-handed alpha
Helix 8
AA8
B
37 47Right-handed alpha
Helix 9
AA9
B
131 148Right-handed alpha
Helix 10
AB1
B
169 175Right-handed 310
Helix 11
AB2
B
181 183Right-handed 310
Helix 12
AB3
B
184 199Right-handed alpha
Helix 13
AB4
B
224 235Right-handed alpha
Helix 14
AB5
B
246 251Right-handed 310
Helix 15
AB6
B
327 347Right-handed alpha
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There are 7 sheets in PDB entry 5Z9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
23 27anti-parallel
Strand 4
A
81 85anti-parallel
Strand 5
A
66 67anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
204 211anti-parallel
Strand 4
A
285 291anti-parallel
Strand 5
A
239 244anti-parallel
Strand 6
B
239 244anti-parallel
Strand 7
B
285 291anti-parallel
Strand 8
B
204 211anti-parallel
Strand 9
B
151 159anti-parallel
Strand 10
B
162 163anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
279 280anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
11 15anti-parallel
Strand 3
B
22 28anti-parallel
Strand 4
B
81 86anti-parallel
Strand 5
B
65 67anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
279 280anti-parallel
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