Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z9J entry

There are 4 chains in PDB entry 5Z9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	THR 397
B	TRP 9	GLN 398
C	ALA 7	GLN 398
D	TRP 9	PHE 152

There are 72 helices in PDB entry 5Z9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed 310
Helix 2	AA2	A	40	49	Right-handed alpha
Helix 3	AA3	A	57	62	Right-handed 310
Helix 4	AA4	A	67	72	Right-handed alpha
Helix 5	AA5	A	74	78	Right-handed 310
Helix 6	AA6	A	82	94	Right-handed alpha
Helix 7	AA7	A	95	117	Right-handed alpha
Helix 8	AA8	A	125	129	Right-handed alpha
Helix 9	AA9	A	131	143	Right-handed alpha
Helix 10	AB1	A	146	164	Right-handed alpha
Helix 11	AB2	A	171	203	Right-handed alpha
Helix 12	AB3	A	207	215	Right-handed alpha
Helix 13	AB4	A	223	239	Right-handed alpha
Helix 14	AB5	A	239	256	Right-handed alpha
Helix 15	AB6	A	256	266	Right-handed alpha
Helix 16	AB7	A	269	281	Right-handed alpha
Helix 17	AB8	A	311	316	Right-handed alpha
Helix 18	AB9	A	349	368	Right-handed alpha
Helix 19	AC1	B	15	20	Right-handed 310
Helix 20	AC2	B	40	49	Right-handed alpha
Helix 21	AC3	B	57	62	Right-handed 310
Helix 22	AC4	B	67	72	Right-handed alpha
Helix 23	AC5	B	74	78	Right-handed 310
Helix 24	AC6	B	81	94	Right-handed alpha
Helix 25	AC7	B	95	116	Right-handed alpha
Helix 26	AC8	B	125	129	Right-handed alpha
Helix 27	AC9	B	131	143	Right-handed alpha
Helix 28	AD1	B	148	160	Right-handed alpha
Helix 29	AD2	B	185	203	Right-handed alpha
Helix 30	AD3	B	207	215	Right-handed alpha
Helix 31	AD4	B	223	239	Right-handed alpha
Helix 32	AD5	B	239	256	Right-handed alpha
Helix 33	AD6	B	256	266	Right-handed alpha
Helix 34	AD7	B	269	281	Right-handed alpha
Helix 35	AD8	B	311	316	Right-handed alpha
Helix 36	AD9	B	349	368	Right-handed alpha
Helix 37	AE1	C	15	20	Right-handed 310
Helix 38	AE2	C	40	49	Right-handed alpha
Helix 39	AE3	C	57	62	Right-handed 310
Helix 40	AE4	C	67	72	Right-handed alpha
Helix 41	AE5	C	74	78	Right-handed 310
Helix 42	AE6	C	81	94	Right-handed alpha
Helix 43	AE7	C	95	117	Right-handed alpha
Helix 44	AE8	C	125	129	Right-handed alpha
Helix 45	AE9	C	131	143	Right-handed alpha
Helix 46	AF1	C	147	165	Right-handed alpha
Helix 47	AF2	C	171	203	Right-handed alpha
Helix 48	AF3	C	207	215	Right-handed alpha
Helix 49	AF4	C	223	239	Right-handed alpha
Helix 50	AF5	C	239	256	Right-handed alpha
Helix 51	AF6	C	256	266	Right-handed alpha
Helix 52	AF7	C	269	281	Right-handed alpha
Helix 53	AF8	C	311	316	Right-handed alpha
Helix 54	AF9	C	349	368	Right-handed alpha
Helix 55	AG1	D	15	20	Right-handed 310
Helix 56	AG2	D	40	49	Right-handed alpha
Helix 57	AG3	D	57	62	Right-handed 310
Helix 58	AG4	D	74	78	Right-handed 310
Helix 59	AG5	D	81	94	Right-handed alpha
Helix 60	AG6	D	95	116	Right-handed alpha
Helix 61	AG7	D	125	129	Right-handed alpha
Helix 62	AG8	D	131	143	Right-handed alpha
Helix 63	AG9	D	145	147	Right-handed 310
Helix 64	AH1	D	148	156	Right-handed alpha
Helix 65	AH2	D	181	203	Right-handed alpha
Helix 66	AH3	D	207	215	Right-handed alpha
Helix 67	AH4	D	223	239	Right-handed alpha
Helix 68	AH5	D	239	256	Right-handed alpha
Helix 69	AH6	D	256	266	Right-handed alpha
Helix 70	AH7	D	269	281	Right-handed alpha
Helix 71	AH8	D	311	316	Right-handed alpha
Helix 72	AH9	D	349	368	Right-handed alpha

There are 18 sheets in PDB entry 5Z9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	307	310	parallel
Strand 4	A	287	291	anti-parallel
Strand 5	A	54	55	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	394	396	anti-parallel
Strand 3	A	372	373	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	220	221	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	300	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	390	392	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	307	310	parallel
Strand 4	B	287	291	anti-parallel
Strand 5	B	54	55	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	394	396	anti-parallel
Strand 3	B	372	373	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	300	302	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	390	392	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	307	310	parallel
Strand 4	C	287	291	anti-parallel
Strand 5	C	54	55	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	394	396	anti-parallel
Strand 3	C	372	373	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	220	221	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	300	302	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	390	392	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	307	310	parallel
Strand 4	D	287	291	anti-parallel
Strand 5	D	54	55	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	394	396	anti-parallel
Strand 3	D	372	373	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	297	first strand
Strand 2	D	300	302	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	390	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9J