Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z9O entry

There are 2 chains in PDB entry 5Z9O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ASN 391
B
 LYS 4LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5Z9O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
47 54Right-handed alpha
Helix 3
AA3
A
54 65Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
91 95Right-handed 310
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
145 161Right-handed alpha
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
197 202Right-handed alpha
Helix 10
AB1
A
204 211Right-handed alpha
Helix 11
AB2
A
212 215Right-handed 310
Helix 12
AB3
A
240 244Right-handed 310
Helix 13
AB4
A
245 247Right-handed 310
Helix 14
AB5
A
248 259Right-handed alpha
Helix 15
AB6
A
280 287Right-handed alpha
Helix 16
AB7
A
295 306Right-handed alpha
Helix 17
AB8
A
316 334Right-handed alpha
Helix 18
AB9
A
334 342Right-handed alpha
Helix 19
AC1
A
343 363Right-handed alpha
Helix 20
AC2
A
385 390Right-handed 310
Helix 21
AC3
B
5 13Right-handed alpha
Helix 22
AC4
B
47 54Right-handed alpha
Helix 23
AC5
B
54 65Right-handed alpha
Helix 24
AC6
B
73 83Right-handed alpha
Helix 25
AC7
B
91 95Right-handed 310
Helix 26
AC8
B
119 127Right-handed alpha
Helix 27
AC9
B
145 161Right-handed alpha
Helix 28
AD1
B
177 188Right-handed alpha
Helix 29
AD2
B
197 202Right-handed alpha
Helix 30
AD3
B
204 211Right-handed alpha
Helix 31
AD4
B
240 244Right-handed 310
Helix 32
AD5
B
245 247Right-handed 310
Helix 33
AD6
B
248 259Right-handed alpha
Helix 34
AD7
B
280 287Right-handed alpha
Helix 35
AD8
B
295 306Right-handed alpha
Helix 36
AD9
B
316 334Right-handed alpha
Helix 37
AE1
B
334 342Right-handed alpha
Helix 38
AE2
B
343 363Right-handed alpha
Helix 39
AE3
B
385 390Right-handed 310
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There are 4 sheets in PDB entry 5Z9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
19 22anti-parallel
Strand 3
A
39 42parallel
Strand 4
A
68 71anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
190 195parallel
Strand 3
A
168 172parallel
Strand 4
A
232 238parallel
Strand 5
A
260 272parallel
Strand 6
A
367 374anti-parallel
Strand 7
A
309 315anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
19 22anti-parallel
Strand 3
B
39 42parallel
Strand 4
B
68 71anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 221first strand
Strand 2
B
190 195parallel
Strand 3
B
168 172parallel
Strand 4
B
232 238parallel
Strand 5
B
260 272parallel
Strand 6
B
367 374anti-parallel
Strand 7
B
309 315anti-parallel
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