Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z9S entry

There are 2 chains in PDB entry 5Z9S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	ALA 788
B	ARG 27	LYS 580

There are 60 helices in PDB entry 5Z9S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	38	Right-handed 310
Helix 2	AA2	A	43	45	Right-handed 310
Helix 3	AA3	A	54	61	Right-handed alpha
Helix 4	AA4	A	70	72	Right-handed 310
Helix 5	AA5	A	73	85	Right-handed alpha
Helix 6	AA6	A	112	120	Right-handed alpha
Helix 7	AA7	A	121	137	Right-handed alpha
Helix 8	AA8	A	159	163	Right-handed 310
Helix 9	AA9	A	167	183	Right-handed alpha
Helix 10	AB1	A	210	214	Right-handed 310
Helix 11	AB2	A	222	230	Right-handed alpha
Helix 12	AB3	A	230	240	Right-handed alpha
Helix 13	AB4	A	260	265	Right-handed alpha
Helix 14	AB5	A	283	291	Right-handed alpha
Helix 15	AB6	A	297	308	Right-handed alpha
Helix 16	AB7	A	318	329	Right-handed alpha
Helix 17	AB8	A	333	351	Right-handed alpha
Helix 18	AB9	A	361	369	Right-handed alpha
Helix 19	AC1	A	371	383	Right-handed alpha
Helix 20	AC2	A	414	420	Right-handed alpha
Helix 21	AC3	A	437	441	Right-handed 310
Helix 22	AC4	A	443	448	Right-handed alpha
Helix 23	AC5	A	494	507	Right-handed alpha
Helix 24	AC6	A	518	522	Right-handed 310
Helix 25	AC7	A	536	552	Right-handed alpha
Helix 26	AC8	A	568	573	Right-handed alpha
Helix 27	AC9	A	601	611	Right-handed alpha
Helix 28	AD1	A	627	631	Right-handed 310
Helix 29	AD2	A	749	751	Right-handed 310
Helix 30	AD3	A	776	778	Right-handed 310
Helix 31	AD4	B	43	45	Right-handed 310
Helix 32	AD5	B	54	61	Right-handed alpha
Helix 33	AD6	B	70	72	Right-handed 310
Helix 34	AD7	B	73	85	Right-handed alpha
Helix 35	AD8	B	112	120	Right-handed alpha
Helix 36	AD9	B	121	137	Right-handed alpha
Helix 37	AE1	B	159	163	Right-handed 310
Helix 38	AE2	B	167	183	Right-handed alpha
Helix 39	AE3	B	210	214	Right-handed 310
Helix 40	AE4	B	222	230	Right-handed alpha
Helix 41	AE5	B	230	240	Right-handed alpha
Helix 42	AE6	B	260	265	Right-handed alpha
Helix 43	AE7	B	283	291	Right-handed alpha
Helix 44	AE8	B	297	308	Right-handed alpha
Helix 45	AE9	B	318	329	Right-handed alpha
Helix 46	AF1	B	333	351	Right-handed alpha
Helix 47	AF2	B	361	369	Right-handed alpha
Helix 48	AF3	B	371	383	Right-handed alpha
Helix 49	AF4	B	398	402	Right-handed 310
Helix 50	AF5	B	414	420	Right-handed alpha
Helix 51	AF6	B	437	441	Right-handed 310
Helix 52	AF7	B	445	449	Right-handed 310
Helix 53	AF8	B	494	507	Right-handed alpha
Helix 54	AF9	B	518	522	Right-handed 310
Helix 55	AG1	B	536	552	Right-handed alpha
Helix 56	AG2	B	568	573	Right-handed alpha
Helix 57	AG3	B	601	611	Right-handed alpha
Helix 58	AG4	B	627	631	Right-handed 310
Helix 59	AG5	B	749	751	Right-handed 310
Helix 60	AG6	B	776	778	Right-handed 310

There are 20 sheets in PDB entry 5Z9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	92	95	parallel
Strand 3	A	65	67	parallel
Strand 4	A	47	50	parallel
Strand 5	A	313	314	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	244	247	parallel
Strand 3	A	277	280	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	255	256	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	390	first strand
Strand 2	A	591	594	anti-parallel
Strand 3	A	555	560	parallel
Strand 4	A	510	516	parallel
Strand 5	A	404	408	parallel
Strand 6	A	457	461	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	487	490	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	649	650	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	689	698	anti-parallel
Strand 3	A	672	675	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	689	698	anti-parallel
Strand 3	A	739	747	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	734	first strand
Strand 2	A	704	714	anti-parallel
Strand 3	A	765	772	anti-parallel
Strand 4	A	780	787	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	754	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	92	95	parallel
Strand 3	B	65	67	parallel
Strand 4	B	47	50	parallel
Strand 5	B	313	314	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	244	247	parallel
Strand 3	B	277	280	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	255	256	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	591	594	anti-parallel
Strand 3	B	555	560	parallel
Strand 4	B	510	516	parallel
Strand 5	B	404	408	parallel
Strand 6	B	457	461	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	487	490	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	646	first strand
Strand 2	B	649	650	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	668	first strand
Strand 2	B	689	698	anti-parallel
Strand 3	B	672	675	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	668	first strand
Strand 2	B	689	698	anti-parallel
Strand 3	B	739	747	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	734	first strand
Strand 2	B	704	714	anti-parallel
Strand 3	B	765	772	anti-parallel
Strand 4	B	780	787	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	754	first strand
Strand 2	B	760	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z9S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9S