Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z9X entry

There are 2 chains in PDB entry 5Z9X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ASP 300
R
 G 2 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5Z9X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
66 87Right-handed alpha
Helix 5
AA5
A
89 93Right-handed 310
Helix 6
AA6
A
94 106Right-handed alpha
Helix 7
AA7
A
108 113Right-handed alpha
Helix 8
AA8
A
126 130Right-handed 310
Helix 9
AA9
A
131 136Right-handed alpha
Helix 10
AB1
A
191 198Right-handed alpha
Helix 11
AB2
A
202 216Right-handed alpha
Helix 12
AB3
A
224 233Right-handed alpha
Helix 13
AB4
A
242 246Right-handed alpha
Helix 14
AB5
A
258 267Right-handed alpha
Helix 15
AB6
A
279 297Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5Z9X. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
234 235parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
155 164anti-parallel
Strand 3
A
140 149anti-parallel
Strand 4
A
219 222parallel
Strand 5
A
239 241parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il