Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z9Y entry

There are 2 chains in PDB entry 5Z9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ALA 245
B
 LYS 5ALA 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5Z9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
57 65Right-handed alpha
Helix 3
AA3
A
77 93Right-handed alpha
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
166 176Right-handed alpha
Helix 7
AA7
A
189 199Right-handed alpha
Helix 8
AA8
A
207 212Right-handed alpha
Helix 9
AA9
A
215 237Right-handed alpha
Helix 10
AB1
B
26 38Right-handed alpha
Helix 11
AB2
B
57 65Right-handed alpha
Helix 12
AB3
B
77 93Right-handed alpha
Helix 13
AB4
B
111 125Right-handed alpha
Helix 14
AB5
B
136 147Right-handed alpha
Helix 15
AB6
B
166 177Right-handed alpha
Helix 16
AB7
B
189 199Right-handed alpha
Helix 17
AB8
B
207 212Right-handed alpha
Helix 18
AB9
B
215 237Right-handed alpha
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There are 7 sheets in PDB entry 5Z9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 13anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
41 45parallel
Strand 3
A
17 20parallel
Strand 4
A
203 206parallel
Strand 5
A
182 183parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
128 133parallel
Strand 3
A
152 153parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 13anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
41 45parallel
Strand 3
B
17 20parallel
Strand 4
B
203 206parallel
Strand 5
B
182 183parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
128 133parallel
Strand 3
B
152 153parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
109 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il