Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZAK entry

There are 2 chains in PDB entry 5ZAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 45LYS 1913
B
 ALA 289ALA 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5ZAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 54Right-handed alpha
Helix 2
AA2
A
69 85Right-handed alpha
Helix 3
AA3
A
102 115Right-handed alpha
Helix 4
AA4
A
151 159Right-handed alpha
Helix 5
AA5
A
176 180Right-handed 310
Helix 6
AA6
A
185 194Right-handed alpha
Helix 7
AA7
A
218 231Right-handed alpha
Helix 8
AA8
A
264 285Right-handed alpha
Helix 9
AA9
A
295 314Right-handed alpha
Helix 10
AB1
A
314 336Right-handed alpha
Helix 11
AB2
A
338 359Right-handed alpha
Helix 12
AB3
A
377 386Right-handed alpha
Helix 13
AB4
A
451 461Right-handed alpha
Helix 14
AB5
A
497 510Right-handed alpha
Helix 15
AB6
A
510 516Right-handed alpha
Helix 16
AB7
A
542 551Right-handed alpha
Helix 17
AB8
A
570 590Right-handed alpha
Helix 18
AB9
A
630 639Right-handed alpha
Helix 19
AC1
A
686 704Right-handed alpha
Helix 20
AC2
A
713 726Right-handed alpha
Helix 21
AC3
A
794 798Right-handed 310
Helix 22
AC4
A
839 855Right-handed alpha
Helix 23
AC5
A
894 903Right-handed alpha
Helix 24
AC6
A
904 907Right-handed 310
Helix 25
AC7
A
923 927Right-handed 310
Helix 26
AC8
A
967 975Right-handed alpha
Helix 27
AC9
A
1002 1010Right-handed alpha
Helix 28
AD1
A
1015 1031Right-handed alpha
Helix 29
AD2
A
1044 1052Right-handed alpha
Helix 30
AD3
A
1053 1072Right-handed alpha
Helix 31
AD4
A
1294 1302Right-handed alpha
Helix 32
AD5
A
1312 1333Right-handed alpha
Helix 33
AD6
A
1339 1352Right-handed alpha
Helix 34
AD7
A
1352 1362Right-handed alpha
Helix 35
AD8
A
1363 1368Right-handed 310
Helix 36
AD9
A
1558 1574Right-handed alpha
Helix 37
AE1
A
1575 1587Right-handed alpha
Helix 38
AE2
A
1594 1599Right-handed alpha
Helix 39
AE3
A
1656 1674Right-handed alpha
Helix 40
AE4
A
1679 1687Right-handed alpha
Helix 41
AE5
A
1701 1722Right-handed alpha
Helix 42
AE6
A
1728 1739Right-handed alpha
Helix 43
AE7
A
1741 1752Right-handed alpha
Helix 44
AE8
A
1762 1774Right-handed alpha
Helix 45
AE9
A
1805 1823Right-handed alpha
Helix 46
AF1
A
1826 1845Right-handed alpha
Helix 47
AF2
A
1853 1858Right-handed alpha
Helix 48
AF3
A
1896 1911Right-handed alpha
Helix 49
AF4
B
293 305Right-handed alpha
Helix 50
AF5
B
343 362Right-handed alpha
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There are 8 sheets in PDB entry 5ZAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
202 206parallel
Strand 3
A
172 173parallel
Strand 4
A
97 99parallel
Strand 5
A
149 150parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
558 561parallel
Strand 3
A
534 535parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
482 483anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 836first strand
Strand 2
A
768 773anti-parallel
Strand 3
A
800 806anti-parallel
Strand 4
A
877 883anti-parallel
Strand 5
A
890 892anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 780first strand
Strand 2
A
823 826anti-parallel
Strand 3
A
817 819anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
990 992first strand
Strand 2
A
945 947anti-parallel
Strand 3
A
930 934anti-parallel
Strand 4
A
1038 1041anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1882 1884first strand
Strand 2
A
1888 1890anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 328first strand
Strand 2
B
336 340anti-parallel
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