Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZAM entry

There are 3 chains in PDB entry 5ZAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 45LYS 1913
B
 ALA 289ALA 363
C
 U 1 C 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5ZAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 54Right-handed alpha
Helix 2
AA2
A
55 57Right-handed 310
Helix 3
AA3
A
69 86Right-handed alpha
Helix 4
AA4
A
102 114Right-handed alpha
Helix 5
AA5
A
151 159Right-handed alpha
Helix 6
AA6
A
176 180Right-handed 310
Helix 7
AA7
A
185 194Right-handed alpha
Helix 8
AA8
A
218 231Right-handed alpha
Helix 9
AA9
A
238 244Right-handed alpha
Helix 10
AB1
A
264 283Right-handed alpha
Helix 11
AB2
A
295 336Right-handed alpha
Helix 12
AB3
A
338 363Right-handed alpha
Helix 13
AB4
A
377 384Right-handed alpha
Helix 14
AB5
A
450 461Right-handed alpha
Helix 15
AB6
A
497 509Right-handed alpha
Helix 16
AB7
A
510 516Right-handed alpha
Helix 17
AB8
A
543 551Right-handed alpha
Helix 18
AB9
A
570 594Right-handed alpha
Helix 19
AC1
A
629 637Right-handed alpha
Helix 20
AC2
A
687 706Right-handed alpha
Helix 21
AC3
A
714 724Right-handed alpha
Helix 22
AC4
A
794 798Right-handed 310
Helix 23
AC5
A
839 859Right-handed alpha
Helix 24
AC6
A
893 903Right-handed alpha
Helix 25
AC7
A
904 907Right-handed 310
Helix 26
AC8
A
967 975Right-handed alpha
Helix 27
AC9
A
1002 1012Right-handed alpha
Helix 28
AD1
A
1015 1028Right-handed alpha
Helix 29
AD2
A
1044 1052Right-handed alpha
Helix 30
AD3
A
1053 1072Right-handed alpha
Helix 31
AD4
A
1294 1300Right-handed alpha
Helix 32
AD5
A
1313 1333Right-handed alpha
Helix 33
AD6
A
1339 1351Right-handed alpha
Helix 34
AD7
A
1352 1362Right-handed alpha
Helix 35
AD8
A
1363 1369Right-handed 310
Helix 36
AD9
A
1558 1573Right-handed alpha
Helix 37
AE1
A
1575 1587Right-handed alpha
Helix 38
AE2
A
1613 1618Right-handed alpha
Helix 39
AE3
A
1654 1657Right-handed 310
Helix 40
AE4
A
1658 1674Right-handed alpha
Helix 41
AE5
A
1680 1688Right-handed alpha
Helix 42
AE6
A
1692 1698Right-handed alpha
Helix 43
AE7
A
1701 1722Right-handed alpha
Helix 44
AE8
A
1728 1739Right-handed alpha
Helix 45
AE9
A
1741 1752Right-handed alpha
Helix 46
AF1
A
1762 1776Right-handed alpha
Helix 47
AF2
A
1807 1823Right-handed alpha
Helix 48
AF3
A
1826 1848Right-handed alpha
Helix 49
AF4
A
1852 1861Right-handed alpha
Helix 50
AF5
A
1896 1911Right-handed alpha
Helix 51
AF6
B
292 305Right-handed alpha
Helix 52
AF7
B
343 363Right-handed alpha
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There are 6 sheets in PDB entry 5ZAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
148 150parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
201 203parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
560 563parallel
Strand 3
A
534 537parallel
Strand 4
A
446 447parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
824 828anti-parallel
Strand 3
A
769 777anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
879 884anti-parallel
Strand 6
A
889 891anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1033first strand
Strand 2
A
987 992anti-parallel
Strand 3
A
945 951anti-parallel
Strand 4
A
931 934anti-parallel
Strand 5
A
1038 1041anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 312first strand
Strand 2
B
325 329anti-parallel
Strand 3
B
335 339anti-parallel
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