Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZB9 entry

There are 2 chains in PDB entry 5ZB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6PRO 262
A
 THR 264THR 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5ZB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
98 102Right-handed 310
Helix 3
AA3
A
109 127Right-handed alpha
Helix 4
AA4
A
149 153Right-handed 310
Helix 5
AA5
A
160 177Right-handed alpha
Helix 6
AA6
A
191 198Right-handed alpha
Helix 7
AA7
A
212 218Right-handed alpha
Helix 8
AA8
A
219 220Right-handed 310
Helix 9
AA9
A
221 227Right-handed 310
Helix 10
AB1
A
239 244Right-handed alpha
Helix 11
AB2
A
250 254Right-handed 310
Helix 12
AB3
A
261 272Right-handed alpha
Helix 13
AB4
A
295 304Right-handed alpha
Helix 14
AB5
A
305 310Right-handed 310
Helix 15
AB6
A
419 432Right-handed alpha
Helix 16
AB7
A
437 457Right-handed alpha
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There are 2 sheets in PDB entry 5ZB9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
49 60anti-parallel
Strand 3
A
21 29anti-parallel
Strand 4
A
416 418parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
201 207parallel
Strand 3
A
316 323anti-parallel
Strand 4
A
132 139anti-parallel
Strand 5
A
85 95parallel
Strand 6
A
70 81anti-parallel
Strand 7
A
49 60anti-parallel
Strand 8
A
21 29anti-parallel
Strand 9
A
463 466anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il