Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZBD entry

There are 2 chains in PDB entry 5ZBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ALA 424
B
 HIS 10ALA 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5ZBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
77 87Right-handed alpha
Helix 4
AA4
A
103 117Right-handed alpha
Helix 5
AA5
A
119 124Right-handed alpha
Helix 6
AA6
A
127 137Right-handed alpha
Helix 7
AA7
A
137 147Right-handed alpha
Helix 8
AA8
A
148 149Right-handed 310
Helix 9
AA9
A
150 155Right-handed 310
Helix 10
AB1
A
159 170Right-handed alpha
Helix 11
AB2
A
173 178Right-handed 310
Helix 12
AB3
A
191 205Right-handed alpha
Helix 13
AB4
A
249 254Right-handed alpha
Helix 14
AB5
A
284 290Right-handed 310
Helix 15
AB6
A
319 332Right-handed alpha
Helix 16
AB7
A
332 349Right-handed alpha
Helix 17
AB8
A
351 355Right-handed 310
Helix 18
AB9
A
396 399Right-handed 310
Helix 19
AC1
A
404 424Right-handed alpha
Helix 20
AC2
B
20 33Right-handed alpha
Helix 21
AC3
B
34 37Right-handed 310
Helix 22
AC4
B
77 87Right-handed alpha
Helix 23
AC5
B
103 117Right-handed alpha
Helix 24
AC6
B
119 124Right-handed alpha
Helix 25
AC7
B
127 137Right-handed alpha
Helix 26
AC8
B
137 147Right-handed alpha
Helix 27
AC9
B
148 149Right-handed 310
Helix 28
AD1
B
150 155Right-handed 310
Helix 29
AD2
B
159 170Right-handed alpha
Helix 30
AD3
B
173 178Right-handed 310
Helix 31
AD4
B
191 205Right-handed alpha
Helix 32
AD5
B
249 254Right-handed alpha
Helix 33
AD6
B
284 290Right-handed 310
Helix 34
AD7
B
319 332Right-handed alpha
Helix 35
AD8
B
332 349Right-handed alpha
Helix 36
AD9
B
351 355Right-handed 310
Helix 37
AE1
B
396 399Right-handed 310
Helix 38
AE2
B
404 424Right-handed alpha
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There are 10 sheets in PDB entry 5ZBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
41 45parallel
Strand 3
A
12 17parallel
Strand 4
A
236 246parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
213 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
41 45parallel
Strand 3
A
12 17parallel
Strand 4
A
236 246parallel
Strand 5
A
392 394parallel
Strand 6
A
383 385anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
63 66anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
185 187anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
304 308anti-parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
269 279anti-parallel
Strand 5
A
361 373anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
41 45parallel
Strand 3
B
11 17parallel
Strand 4
B
236 246parallel
Strand 5
B
225 231anti-parallel
Strand 6
B
213 220anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
41 45parallel
Strand 3
B
11 17parallel
Strand 4
B
236 246parallel
Strand 5
B
392 394parallel
Strand 6
B
383 385anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
64 66anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
185 187anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
304 308anti-parallel
Strand 3
B
312 318anti-parallel
Strand 4
B
269 280anti-parallel
Strand 5
B
360 373anti-parallel
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