Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZBN entry

There are 3 chains in PDB entry 5ZBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 371
B
 GLU 3LEU 366
C
 VAL 4ASP 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 5ZBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 8Right-handed 310
Helix 2
AA2
A
9 18Right-handed alpha
Helix 3
AA3
A
19 29Right-handed alpha
Helix 4
AA4
A
39 45Right-handed alpha
Helix 5
AA5
A
81 85Right-handed 310
Helix 6
AA6
A
88 101Right-handed alpha
Helix 7
AA7
A
113 120Right-handed alpha
Helix 8
AA8
A
134 148Right-handed alpha
Helix 9
AA9
A
199 207Right-handed alpha
Helix 10
AB1
A
213 224Right-handed alpha
Helix 11
AB2
A
235 245Right-handed alpha
Helix 12
AB3
A
265 278Right-handed alpha
Helix 13
AB4
A
291 301Right-handed alpha
Helix 14
AB5
A
309 320Right-handed alpha
Helix 15
AB6
A
320 343Right-handed alpha
Helix 16
AB7
A
346 350Right-handed 310
Helix 17
AB8
A
351 353Right-handed 310
Helix 18
AB9
B
8 18Right-handed alpha
Helix 19
AC1
B
19 28Right-handed alpha
Helix 20
AC2
B
39 45Right-handed alpha
Helix 21
AC3
B
81 85Right-handed 310
Helix 22
AC4
B
89 101Right-handed alpha
Helix 23
AC5
B
113 119Right-handed alpha
Helix 24
AC6
B
134 148Right-handed alpha
Helix 25
AC7
B
199 207Right-handed alpha
Helix 26
AC8
B
213 224Right-handed alpha
Helix 27
AC9
B
235 246Right-handed alpha
Helix 28
AD1
B
266 278Right-handed alpha
Helix 29
AD2
B
291 301Right-handed alpha
Helix 30
AD3
B
309 343Right-handed alpha
Helix 31
AD4
B
346 350Right-handed 310
Helix 32
AD5
B
351 353Right-handed 310
Helix 33
AD6
C
8 18Right-handed alpha
Helix 34
AD7
C
19 29Right-handed alpha
Helix 35
AD8
C
39 45Right-handed alpha
Helix 36
AD9
C
81 85Right-handed 310
Helix 37
AE1
C
88 101Right-handed alpha
Helix 38
AE2
C
113 120Right-handed alpha
Helix 39
AE3
C
134 148Right-handed alpha
Helix 40
AE4
C
202 207Right-handed alpha
Helix 41
AE5
C
213 221Right-handed alpha
Helix 42
AE6
C
235 246Right-handed alpha
Helix 43
AE7
C
265 278Right-handed alpha
Helix 44
AE8
C
291 301Right-handed alpha
Helix 45
AE9
C
309 343Right-handed alpha
Helix 46
AF1
C
346 350Right-handed 310
Helix 47
AF2
C
351 353Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 5ZBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
68 70anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
104 106parallel
Strand 3
A
125 129parallel
Strand 4
A
152 156parallel
Strand 5
A
228 231parallel
Strand 6
A
249 252parallel
Strand 7
A
283 286parallel
Strand 8
A
305 308parallel
Strand 9
A
74 76parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
68 70anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
104 106parallel
Strand 3
B
125 129parallel
Strand 4
B
152 156parallel
Strand 5
B
228 231parallel
Strand 6
B
249 252parallel
Strand 7
B
283 286parallel
Strand 8
B
305 308parallel
Strand 9
B
74 76parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 65first strand
Strand 2
C
68 70anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 76first strand
Strand 2
C
104 106parallel
Strand 3
C
125 129parallel
Strand 4
C
152 155parallel
Strand 5
C
228 231parallel
Strand 6
C
249 253parallel
Strand 7
C
283 286parallel
Strand 8
C
305 308parallel
Strand 9
C
74 76parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il