Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZBR entry

There are 3 chains in PDB entry 5ZBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 4ASP 370
A
 SER 4LEU 371
C
 SER 4LEU 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5ZBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 22Right-handed alpha
Helix 2
AA2
B
68 93Right-handed alpha
Helix 3
AA3
B
108 114Right-handed alpha
Helix 4
AA4
B
121 138Right-handed alpha
Helix 5
AA5
B
193 208Right-handed alpha
Helix 6
AA6
B
277 294Right-handed alpha
Helix 7
AA7
B
304 307Right-handed 310
Helix 8
AA8
B
308 314Right-handed alpha
Helix 9
AA9
B
333 335Right-handed 310
Helix 10
AB1
B
336 351Right-handed alpha
Helix 11
AB2
B
362 369Right-handed alpha
Helix 12
AB3
A
16 22Right-handed alpha
Helix 13
AB4
A
75 83Right-handed alpha
Helix 14
AB5
A
83 93Right-handed alpha
Helix 15
AB6
A
108 114Right-handed alpha
Helix 16
AB7
A
121 138Right-handed alpha
Helix 17
AB8
A
193 206Right-handed alpha
Helix 18
AB9
A
277 294Right-handed alpha
Helix 19
AC1
A
304 307Right-handed 310
Helix 20
AC2
A
308 314Right-handed alpha
Helix 21
AC3
A
333 335Right-handed 310
Helix 22
AC4
A
336 351Right-handed alpha
Helix 23
AC5
A
362 371Right-handed alpha
Helix 24
AC6
C
16 22Right-handed alpha
Helix 25
AC7
C
75 93Right-handed alpha
Helix 26
AC8
C
108 114Right-handed alpha
Helix 27
AC9
C
121 138Right-handed alpha
Helix 28
AD1
C
193 207Right-handed alpha
Helix 29
AD2
C
277 295Right-handed alpha
Helix 30
AD3
C
304 307Right-handed 310
Helix 31
AD4
C
308 314Right-handed alpha
Helix 32
AD5
C
333 335Right-handed 310
Helix 33
AD6
C
336 351Right-handed alpha
Helix 34
AD7
C
362 371Right-handed alpha
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There are 12 sheets in PDB entry 5ZBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
7 12parallel
Strand 3
B
323 330parallel
Strand 4
B
96 103parallel
Strand 5
B
241 253parallel
Strand 6
B
223 236anti-parallel
Strand 7
B
142 154anti-parallel
Strand 8
B
157 160anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
7 12parallel
Strand 3
B
323 330parallel
Strand 4
B
96 103parallel
Strand 5
B
241 253parallel
Strand 6
B
223 236anti-parallel
Strand 7
B
142 154anti-parallel
Strand 8
B
189 191anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
54 57anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 176first strand
Strand 2
B
180 184anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
7 12parallel
Strand 3
A
323 330parallel
Strand 4
A
96 103parallel
Strand 5
A
242 253parallel
Strand 6
A
223 235anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
157 160anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
7 12parallel
Strand 3
A
323 330parallel
Strand 4
A
96 103parallel
Strand 5
A
242 253parallel
Strand 6
A
223 235anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
189 191anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
54 57anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
180 183anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
7 12parallel
Strand 3
C
323 330parallel
Strand 4
C
97 103parallel
Strand 5
C
242 253parallel
Strand 6
C
223 235anti-parallel
Strand 7
C
142 154anti-parallel
Strand 8
C
157 160anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
7 12parallel
Strand 3
C
323 330parallel
Strand 4
C
97 103parallel
Strand 5
C
242 253parallel
Strand 6
C
223 235anti-parallel
Strand 7
C
142 154anti-parallel
Strand 8
C
189 191anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
34 37anti-parallel
Strand 3
C
54 57anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
182 184anti-parallel
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