Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZC0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZC0 entry

There are 6 chains in PDB entry 5ZC0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 62	ARG 342
B	ASP 62	ARG 342
C	ASP 62	ARG 342
D	ASP 62	ARG 342
E	ASP 62	ARG 342
F	ASP 62	ARG 342

There are 78 helices in PDB entry 5ZC0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	77	Right-handed alpha
Helix 2	AA2	A	102	106	Right-handed 310
Helix 3	AA3	A	144	148	Right-handed 310
Helix 4	AA4	A	154	158	Right-handed 310
Helix 5	AA5	A	166	171	Right-handed alpha
Helix 6	AA6	A	186	188	Right-handed 310
Helix 7	AA7	A	189	194	Right-handed alpha
Helix 8	AA8	A	203	209	Right-handed 310
Helix 9	AA9	A	211	219	Right-handed alpha
Helix 10	AB1	A	244	252	Right-handed alpha
Helix 11	AB2	A	253	258	Right-handed alpha
Helix 12	AB3	A	289	293	Right-handed 310
Helix 13	AB4	A	329	334	Right-handed alpha
Helix 14	AB5	B	69	77	Right-handed alpha
Helix 15	AB6	B	102	106	Right-handed 310
Helix 16	AB7	B	144	148	Right-handed 310
Helix 17	AB8	B	154	158	Right-handed 310
Helix 18	AB9	B	166	171	Right-handed alpha
Helix 19	AC1	B	186	188	Right-handed 310
Helix 20	AC2	B	189	194	Right-handed alpha
Helix 21	AC3	B	203	208	Right-handed alpha
Helix 22	AC4	B	211	219	Right-handed alpha
Helix 23	AC5	B	244	252	Right-handed alpha
Helix 24	AC6	B	253	258	Right-handed alpha
Helix 25	AC7	B	289	293	Right-handed 310
Helix 26	AC8	B	329	334	Right-handed alpha
Helix 27	AC9	C	69	77	Right-handed alpha
Helix 28	AD1	C	102	106	Right-handed 310
Helix 29	AD2	C	144	148	Right-handed 310
Helix 30	AD3	C	154	158	Right-handed 310
Helix 31	AD4	C	166	171	Right-handed alpha
Helix 32	AD5	C	186	188	Right-handed 310
Helix 33	AD6	C	189	194	Right-handed alpha
Helix 34	AD7	C	203	208	Right-handed alpha
Helix 35	AD8	C	211	219	Right-handed alpha
Helix 36	AD9	C	244	252	Right-handed alpha
Helix 37	AE1	C	255	258	Right-handed 310
Helix 38	AE2	C	289	293	Right-handed 310
Helix 39	AE3	C	329	334	Right-handed alpha
Helix 40	AE4	D	69	77	Right-handed alpha
Helix 41	AE5	D	102	106	Right-handed 310
Helix 42	AE6	D	144	148	Right-handed 310
Helix 43	AE7	D	154	158	Right-handed 310
Helix 44	AE8	D	166	171	Right-handed alpha
Helix 45	AE9	D	186	188	Right-handed 310
Helix 46	AF1	D	189	194	Right-handed alpha
Helix 47	AF2	D	203	208	Right-handed alpha
Helix 48	AF3	D	211	219	Right-handed alpha
Helix 49	AF4	D	244	252	Right-handed alpha
Helix 50	AF5	D	253	258	Right-handed alpha
Helix 51	AF6	D	289	293	Right-handed 310
Helix 52	AF7	D	329	334	Right-handed alpha
Helix 53	AF8	E	69	77	Right-handed alpha
Helix 54	AF9	E	102	106	Right-handed 310
Helix 55	AG1	E	144	148	Right-handed 310
Helix 56	AG2	E	154	158	Right-handed 310
Helix 57	AG3	E	166	171	Right-handed alpha
Helix 58	AG4	E	186	188	Right-handed 310
Helix 59	AG5	E	189	194	Right-handed alpha
Helix 60	AG6	E	203	208	Right-handed alpha
Helix 61	AG7	E	211	219	Right-handed alpha
Helix 62	AG8	E	244	252	Right-handed alpha
Helix 63	AG9	E	253	258	Right-handed alpha
Helix 64	AH1	E	289	293	Right-handed 310
Helix 65	AH2	E	329	334	Right-handed alpha
Helix 66	AH3	F	69	77	Right-handed alpha
Helix 67	AH4	F	102	106	Right-handed 310
Helix 68	AH5	F	144	148	Right-handed 310
Helix 69	AH6	F	154	158	Right-handed 310
Helix 70	AH7	F	166	171	Right-handed alpha
Helix 71	AH8	F	186	188	Right-handed 310
Helix 72	AH9	F	189	194	Right-handed alpha
Helix 73	AI1	F	203	209	Right-handed 310
Helix 74	AI2	F	211	219	Right-handed alpha
Helix 75	AI3	F	244	252	Right-handed alpha
Helix 76	AI4	F	253	258	Right-handed alpha
Helix 77	AI5	F	289	293	Right-handed 310
Helix 78	AI6	F	329	334	Right-handed alpha

There are 18 sheets in PDB entry 5ZC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	94	100	anti-parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	94	100	anti-parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	335	342	anti-parallel
Strand 5	A	175	182	anti-parallel
Strand 6	A	196	199	anti-parallel
Strand 7	A	239	242	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	260	270	anti-parallel
Strand 3	A	276	285	anti-parallel
Strand 4	A	295	297	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	94	100	anti-parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	94	100	anti-parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	335	342	anti-parallel
Strand 5	B	175	182	anti-parallel
Strand 6	B	196	199	anti-parallel
Strand 7	B	239	242	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	260	270	anti-parallel
Strand 3	B	276	285	anti-parallel
Strand 4	B	295	297	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	94	100	anti-parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	163	164	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	94	100	anti-parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	335	342	anti-parallel
Strand 5	C	175	182	anti-parallel
Strand 6	C	196	199	anti-parallel
Strand 7	C	239	242	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	260	270	anti-parallel
Strand 3	C	276	285	anti-parallel
Strand 4	C	295	297	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	88	first strand
Strand 2	D	94	100	anti-parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	163	164	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	88	first strand
Strand 2	D	94	100	anti-parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	335	342	anti-parallel
Strand 5	D	175	182	anti-parallel
Strand 6	D	196	199	anti-parallel
Strand 7	D	239	242	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	260	270	anti-parallel
Strand 3	D	276	285	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	88	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	163	164	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	88	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	335	342	anti-parallel
Strand 5	E	175	182	anti-parallel
Strand 6	E	196	199	anti-parallel
Strand 7	E	239	242	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	260	270	anti-parallel
Strand 3	E	276	285	anti-parallel
Strand 4	E	295	297	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	88	first strand
Strand 2	F	94	100	anti-parallel
Strand 3	F	108	114	anti-parallel
Strand 4	F	163	164	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	88	first strand
Strand 2	F	94	100	anti-parallel
Strand 3	F	108	114	anti-parallel
Strand 4	F	335	342	anti-parallel
Strand 5	F	175	182	anti-parallel
Strand 6	F	196	199	anti-parallel
Strand 7	F	239	242	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	260	270	anti-parallel
Strand 3	F	276	285	anti-parallel
Strand 4	F	295	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZC0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZC0