Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZCM entry

There is 1 chain in PDB entry 5ZCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -8ALA 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5ZCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 37Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
49 63Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
83 99Right-handed alpha
Helix 7
AA7
A
141 155Right-handed alpha
Helix 8
AA8
A
167 176Right-handed alpha
Helix 9
AA9
A
195 205Right-handed alpha
Helix 10
AB1
A
215 224Right-handed 310
Helix 11
AB2
A
225 230Right-handed alpha
Helix 12
AB3
A
233 236Right-handed 310
Helix 13
AB4
A
237 247Right-handed alpha
Helix 14
AB5
A
250 261Right-handed alpha
Helix 15
AB6
A
274 281Right-handed alpha
Helix 16
AB7
A
288 297Right-handed alpha
Helix 17
AB8
A
306 310Right-handed 310
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There are 2 sheets in PDB entry 5ZCM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
10 12anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
40 42parallel
Strand 3
A
72 77parallel
Strand 4
A
103 108parallel
Strand 5
A
158 164parallel
Strand 6
A
184 188parallel
Strand 7
A
208 212parallel
Strand 8
A
264 265parallel
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