Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZCR entry

There are 2 chains in PDB entry 5ZCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	LYS 726
B	ILE 2	LYS 726

There are 72 helices in PDB entry 5ZCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	22	Right-handed alpha
Helix 2	AA2	A	22	30	Right-handed alpha
Helix 3	AA3	A	63	77	Right-handed alpha
Helix 4	AA4	A	97	107	Right-handed alpha
Helix 5	AA5	A	108	110	Right-handed 310
Helix 6	AA6	A	132	139	Right-handed alpha
Helix 7	AA7	A	159	169	Right-handed alpha
Helix 8	AA8	A	173	177	Right-handed 310
Helix 9	AA9	A	178	188	Right-handed alpha
Helix 10	AB1	A	219	227	Right-handed alpha
Helix 11	AB2	A	227	233	Right-handed alpha
Helix 12	AB3	A	242	246	Right-handed 310
Helix 13	AB4	A	248	261	Right-handed alpha
Helix 14	AB5	A	289	300	Right-handed alpha
Helix 15	AB6	A	302	304	Right-handed 310
Helix 16	AB7	A	305	318	Right-handed alpha
Helix 17	AB8	A	322	339	Right-handed alpha
Helix 18	AB9	A	339	351	Right-handed alpha
Helix 19	AC1	A	353	364	Right-handed alpha
Helix 20	AC2	A	376	381	Right-handed alpha
Helix 21	AC3	A	390	398	Right-handed alpha
Helix 22	AC4	A	400	409	Right-handed alpha
Helix 23	AC5	A	412	416	Right-handed 310
Helix 24	AC6	A	420	424	Right-handed 310
Helix 25	AC7	A	436	446	Right-handed alpha
Helix 26	AC8	A	464	474	Right-handed alpha
Helix 27	AC9	A	477	492	Right-handed alpha
Helix 28	AD1	A	497	512	Right-handed alpha
Helix 29	AD2	A	518	533	Right-handed alpha
Helix 30	AD3	A	542	557	Right-handed alpha
Helix 31	AD4	A	559	591	Right-handed alpha
Helix 32	AD5	A	611	615	Right-handed 310
Helix 33	AD6	A	618	628	Right-handed alpha
Helix 34	AD7	A	638	656	Right-handed alpha
Helix 35	AD8	A	711	716	Right-handed alpha
Helix 36	AD9	B	15	22	Right-handed alpha
Helix 37	AE1	B	22	30	Right-handed alpha
Helix 38	AE2	B	60	62	Right-handed 310
Helix 39	AE3	B	63	77	Right-handed alpha
Helix 40	AE4	B	97	107	Right-handed alpha
Helix 41	AE5	B	108	110	Right-handed 310
Helix 42	AE6	B	132	139	Right-handed alpha
Helix 43	AE7	B	159	169	Right-handed alpha
Helix 44	AE8	B	173	177	Right-handed 310
Helix 45	AE9	B	178	188	Right-handed alpha
Helix 46	AF1	B	219	227	Right-handed alpha
Helix 47	AF2	B	227	232	Right-handed alpha
Helix 48	AF3	B	242	246	Right-handed 310
Helix 49	AF4	B	248	261	Right-handed alpha
Helix 50	AF5	B	289	300	Right-handed alpha
Helix 51	AF6	B	302	304	Right-handed 310
Helix 52	AF7	B	305	318	Right-handed alpha
Helix 53	AF8	B	322	339	Right-handed alpha
Helix 54	AF9	B	339	350	Right-handed alpha
Helix 55	AG1	B	353	364	Right-handed alpha
Helix 56	AG2	B	376	381	Right-handed alpha
Helix 57	AG3	B	390	398	Right-handed alpha
Helix 58	AG4	B	400	409	Right-handed alpha
Helix 59	AG5	B	412	416	Right-handed 310
Helix 60	AG6	B	420	424	Right-handed 310
Helix 61	AG7	B	436	446	Right-handed alpha
Helix 62	AG8	B	464	472	Right-handed alpha
Helix 63	AG9	B	473	476	Right-handed 310
Helix 64	AH1	B	477	492	Right-handed alpha
Helix 65	AH2	B	497	512	Right-handed alpha
Helix 66	AH3	B	518	533	Right-handed alpha
Helix 67	AH4	B	542	558	Right-handed alpha
Helix 68	AH5	B	559	591	Right-handed alpha
Helix 69	AH6	B	611	615	Right-handed 310
Helix 70	AH7	B	618	628	Right-handed alpha
Helix 71	AH8	B	638	656	Right-handed alpha
Helix 72	AH9	B	711	716	Right-handed alpha

There are 14 sheets in PDB entry 5ZCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	265	268	parallel
Strand 3	A	237	240	parallel
Strand 4	A	81	86	parallel
Strand 5	A	33	36	parallel
Strand 6	A	5	8	parallel
Strand 7	A	594	598	parallel
Strand 8	A	453	454	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	52	58	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	205	206	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	191	195	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	148	151	anti-parallel
Strand 3	A	154	157	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	664	first strand
Strand 2	A	667	670	anti-parallel
Strand 3	A	673	677	anti-parallel
Strand 4	A	720	725	anti-parallel
Strand 5	A	695	697	anti-parallel
Strand 6	A	702	704	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	691	first strand
Strand 2	A	707	710	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	265	268	parallel
Strand 3	B	237	240	parallel
Strand 4	B	81	86	parallel
Strand 5	B	33	36	parallel
Strand 6	B	5	8	parallel
Strand 7	B	594	598	parallel
Strand 8	B	453	454	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	52	58	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	205	206	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	129	first strand
Strand 2	B	191	195	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	148	151	anti-parallel
Strand 3	B	154	157	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	664	first strand
Strand 2	B	667	670	anti-parallel
Strand 3	B	673	677	anti-parallel
Strand 4	B	720	725	anti-parallel
Strand 5	B	695	697	anti-parallel
Strand 6	B	702	704	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	690	first strand
Strand 2	B	708	710	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZCR