Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZDC entry

There are 6 chains in PDB entry 5ZDC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 29	PRO 281
F	VAL 29	LEU 280
H	VAL 29	PRO 281
J	VAL 29	PRO 281
L	VAL 29	LEU 280
D	VAL 29	GLU 72

There are 88 helices in PDB entry 5ZDC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	33	40	Right-handed alpha
Helix 2	AA2	C	45	47	Right-handed 310
Helix 3	AA3	C	48	60	Right-handed alpha
Helix 4	AA4	C	73	82	Right-handed alpha
Helix 5	AA5	C	83	85	Right-handed 310
Helix 6	AA6	C	98	103	Right-handed 310
Helix 7	AA7	C	109	118	Right-handed alpha
Helix 8	AA8	C	119	125	Right-handed alpha
Helix 9	AA9	C	126	128	Right-handed 310
Helix 10	AB1	C	129	139	Right-handed alpha
Helix 11	AB2	C	180	188	Right-handed alpha
Helix 12	AB3	C	189	193	Right-handed 310
Helix 13	AB4	C	194	213	Right-handed alpha
Helix 14	AB5	C	231	245	Right-handed alpha
Helix 15	AB6	C	265	275	Right-handed alpha
Helix 16	AB7	F	33	40	Right-handed alpha
Helix 17	AB8	F	45	47	Right-handed 310
Helix 18	AB9	F	48	60	Right-handed alpha
Helix 19	AC1	F	73	83	Right-handed alpha
Helix 20	AC2	F	98	103	Right-handed 310
Helix 21	AC3	F	109	117	Right-handed alpha
Helix 22	AC4	F	119	125	Right-handed alpha
Helix 23	AC5	F	126	128	Right-handed 310
Helix 24	AC6	F	129	140	Right-handed alpha
Helix 25	AC7	F	180	188	Right-handed alpha
Helix 26	AC8	F	189	193	Right-handed 310
Helix 27	AC9	F	194	213	Right-handed alpha
Helix 28	AD1	F	231	245	Right-handed alpha
Helix 29	AD2	F	265	275	Right-handed alpha
Helix 30	AD3	F	276	279	Right-handed 310
Helix 31	AD4	H	33	40	Right-handed alpha
Helix 32	AD5	H	45	47	Right-handed 310
Helix 33	AD6	H	48	60	Right-handed alpha
Helix 34	AD7	H	73	82	Right-handed alpha
Helix 35	AD8	H	98	103	Right-handed 310
Helix 36	AD9	H	109	118	Right-handed alpha
Helix 37	AE1	H	119	125	Right-handed alpha
Helix 38	AE2	H	126	128	Right-handed 310
Helix 39	AE3	H	129	140	Right-handed alpha
Helix 40	AE4	H	180	188	Right-handed alpha
Helix 41	AE5	H	189	193	Right-handed 310
Helix 42	AE6	H	194	213	Right-handed alpha
Helix 43	AE7	H	231	244	Right-handed alpha
Helix 44	AE8	H	265	275	Right-handed alpha
Helix 45	AE9	H	275	280	Right-handed alpha
Helix 46	AF1	J	33	41	Right-handed alpha
Helix 47	AF2	J	45	47	Right-handed 310
Helix 48	AF3	J	48	60	Right-handed alpha
Helix 49	AF4	J	73	82	Right-handed alpha
Helix 50	AF5	J	83	85	Right-handed 310
Helix 51	AF6	J	98	103	Right-handed 310
Helix 52	AF7	J	109	117	Right-handed alpha
Helix 53	AF8	J	119	125	Right-handed alpha
Helix 54	AF9	J	126	128	Right-handed 310
Helix 55	AG1	J	129	140	Right-handed alpha
Helix 56	AG2	J	180	188	Right-handed alpha
Helix 57	AG3	J	189	193	Right-handed 310
Helix 58	AG4	J	194	213	Right-handed alpha
Helix 59	AG5	J	231	244	Right-handed alpha
Helix 60	AG6	J	265	276	Right-handed alpha
Helix 61	AG7	L	33	41	Right-handed alpha
Helix 62	AG8	L	45	47	Right-handed 310
Helix 63	AG9	L	48	60	Right-handed alpha
Helix 64	AH1	L	73	82	Right-handed alpha
Helix 65	AH2	L	98	103	Right-handed 310
Helix 66	AH3	L	109	117	Right-handed alpha
Helix 67	AH4	L	119	125	Right-handed alpha
Helix 68	AH5	L	129	140	Right-handed alpha
Helix 69	AH6	L	180	188	Right-handed alpha
Helix 70	AH7	L	189	193	Right-handed 310
Helix 71	AH8	L	194	213	Right-handed alpha
Helix 72	AH9	L	231	245	Right-handed alpha
Helix 73	AI1	L	265	280	Right-handed alpha
Helix 74	AI2	D	33	40	Right-handed alpha
Helix 75	AI3	D	45	47	Right-handed 310
Helix 76	AI4	D	48	60	Right-handed alpha
Helix 77	AI5	D	73	82	Right-handed alpha
Helix 78	AI6	D	83	85	Right-handed 310
Helix 79	AI7	D	98	103	Right-handed 310
Helix 80	AI8	D	109	118	Right-handed alpha
Helix 81	AI9	D	119	125	Right-handed alpha
Helix 82	AJ1	D	126	128	Right-handed 310
Helix 83	AJ2	D	129	140	Right-handed alpha
Helix 84	AJ3	D	180	188	Right-handed alpha
Helix 85	AJ4	D	189	193	Right-handed 310
Helix 86	AJ5	D	194	213	Right-handed alpha
Helix 87	AJ6	D	231	244	Right-handed alpha
Helix 88	AJ7	D	265	276	Right-handed alpha

There are 6 sheets in PDB entry 5ZDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	148	158	anti-parallel
Strand 3	C	164	176	anti-parallel
Strand 4	C	88	93	parallel
Strand 5	C	217	220	parallel
Strand 6	C	253	257	parallel
Strand 7	C	66	70	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	44	first strand
Strand 2	F	148	158	anti-parallel
Strand 3	F	164	176	anti-parallel
Strand 4	F	88	93	parallel
Strand 5	F	217	220	parallel
Strand 6	F	253	257	parallel
Strand 7	F	66	70	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	44	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	164	176	anti-parallel
Strand 4	H	88	93	parallel
Strand 5	H	217	220	parallel
Strand 6	H	253	257	parallel
Strand 7	H	66	70	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	44	first strand
Strand 2	J	148	158	anti-parallel
Strand 3	J	164	176	anti-parallel
Strand 4	J	88	93	parallel
Strand 5	J	217	220	parallel
Strand 6	J	253	257	parallel
Strand 7	J	66	70	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	44	first strand
Strand 2	L	148	158	anti-parallel
Strand 3	L	164	176	anti-parallel
Strand 4	L	88	93	parallel
Strand 5	L	217	220	parallel
Strand 6	L	253	257	parallel
Strand 7	L	66	70	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	148	158	anti-parallel
Strand 3	D	164	176	anti-parallel
Strand 4	D	88	93	parallel
Strand 5	D	217	220	parallel
Strand 6	D	253	257	parallel
Strand 7	D	66	70	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZDC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDC