Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZDG entry

There is 1 chain in PDB entry 5ZDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 29CYS 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5ZDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
33 41Right-handed alpha
Helix 2
AA2
C
45 47Right-handed 310
Helix 3
AA3
C
48 60Right-handed alpha
Helix 4
AA4
C
73 82Right-handed alpha
Helix 5
AA5
C
83 85Right-handed 310
Helix 6
AA6
C
98 103Right-handed 310
Helix 7
AA7
C
109 118Right-handed alpha
Helix 8
AA8
C
119 125Right-handed alpha
Helix 9
AA9
C
126 128Right-handed 310
Helix 10
AB1
C
129 140Right-handed alpha
Helix 11
AB2
C
180 188Right-handed alpha
Helix 12
AB3
C
189 193Right-handed 310
Helix 13
AB4
C
194 213Right-handed alpha
Helix 14
AB5
C
231 245Right-handed alpha
Helix 15
AB6
C
265 275Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5ZDG.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 44first strand
Strand 2
C
148 158anti-parallel
Strand 3
C
164 176anti-parallel
Strand 4
C
88 93parallel
Strand 5
C
217 220parallel
Strand 6
C
253 257parallel
Strand 7
C
66 70parallel
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