Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZDL entry

There is 1 chain in PDB entry 5ZDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LYS 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5ZDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
38 55Right-handed alpha
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
99 113Right-handed alpha
Helix 5
AA5
A
122 132Right-handed alpha
Helix 6
AA6
A
142 156Right-handed alpha
Helix 7
AA7
A
175 179Right-handed 310
Helix 8
AA8
A
203 216Right-handed alpha
Helix 9
AA9
A
225 228Right-handed 310
Helix 10
AB1
A
229 241Right-handed alpha
Helix 11
AB2
A
268 278Right-handed alpha
Helix 12
AB3
A
291 299Right-handed alpha
Helix 13
AB4
A
301 313Right-handed alpha
Helix 14
AB5
A
322 335Right-handed alpha
Helix 15
AB6
A
389 391Right-handed 310
Helix 16
AB7
A
485 489Right-handed 310
Helix 17
AB8
A
503 508Right-handed 310
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There are 6 sheets in PDB entry 5ZDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
58 63parallel
Strand 3
A
92 95parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
164 167anti-parallel
Strand 3
A
182 186anti-parallel
Strand 4
A
200 202anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223first strand
Strand 2
A
253 257parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
513 516parallel
Strand 3
A
520 524anti-parallel
Strand 4
A
534 541anti-parallel
Strand 5
A
463 470parallel
Strand 6
A
494 501anti-parallel
Strand 7
A
343 344anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
408 410parallel
Strand 3
A
415 423anti-parallel
Strand 4
A
428 435anti-parallel
Strand 5
A
347 352parallel
Strand 6
A
383 387anti-parallel
Strand 7
A
457 458anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 364first strand
Strand 2
A
375 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il