Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZDM entry

There is 1 chain in PDB entry 5ZDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10SER 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5ZDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 72Right-handed 310
Helix 2
AA2
A
143 153Right-handed alpha
Helix 3
AA3
A
157 177Right-handed alpha
Helix 4
AA4
A
183 189Right-handed 310
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There are 2 sheets in PDB entry 5ZDM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
27 40anti-parallel
Strand 3
A
17 24anti-parallel
Strand 4
A
120 123parallel
Strand 5
A
115 117anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
27 40anti-parallel
Strand 3
A
43 48anti-parallel
Strand 4
A
80 84anti-parallel
Strand 5
A
90 96anti-parallel
Strand 6
A
103 111anti-parallel
Strand 7
A
125 133anti-parallel
Strand 8
A
140 142anti-parallel
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