Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZEF entry

There are 2 chains in PDB entry 5ZEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 294
B
 GLN -1LYS 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5ZEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 23Right-handed 310
Helix 2
AA2
A
24 32Right-handed alpha
Helix 3
AA3
A
33 40Right-handed alpha
Helix 4
AA4
A
66 85Right-handed alpha
Helix 5
AA5
A
99 112Right-handed alpha
Helix 6
AA6
A
139 142Right-handed 310
Helix 7
AA7
A
143 149Right-handed alpha
Helix 8
AA8
A
153 158Right-handed alpha
Helix 9
AA9
A
165 167Right-handed 310
Helix 10
AB1
A
178 188Right-handed alpha
Helix 11
AB2
A
195 202Right-handed alpha
Helix 12
AB3
A
202 214Right-handed alpha
Helix 13
AB4
A
227 229Right-handed 310
Helix 14
AB5
A
246 259Right-handed alpha
Helix 15
AB6
A
277 293Right-handed alpha
Helix 16
AB7
B
21 23Right-handed 310
Helix 17
AB8
B
24 32Right-handed alpha
Helix 18
AB9
B
33 40Right-handed alpha
Helix 19
AC1
B
66 85Right-handed alpha
Helix 20
AC2
B
99 112Right-handed alpha
Helix 21
AC3
B
139 142Right-handed 310
Helix 22
AC4
B
143 149Right-handed alpha
Helix 23
AC5
B
153 158Right-handed alpha
Helix 24
AC6
B
165 167Right-handed 310
Helix 25
AC7
B
178 188Right-handed alpha
Helix 26
AC8
B
195 202Right-handed alpha
Helix 27
AC9
B
202 214Right-handed alpha
Helix 28
AD1
B
227 229Right-handed 310
Helix 29
AD2
B
246 259Right-handed alpha
Helix 30
AD3
B
277 292Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5ZEF.

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
169 174parallel
Strand 3
A
118 123parallel
Strand 4
A
219 225parallel
Strand 5
A
263 269parallel
Strand 6
A
90 95parallel
Strand 7
A
6 11parallel
Strand 8
A
44 49parallel
Strand 9
B
44 49anti-parallel
Strand 10
B
5 11parallel
Strand 11
B
90 95parallel
Strand 12
B
263 269parallel
Strand 13
B
219 225parallel
Strand 14
B
118 123parallel
Strand 15
B
169 174parallel
Strand 16
B
191 194parallel
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