Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZER entry

There are 2 chains in PDB entry 5ZER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 355
B
 THR 2ARG 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5ZER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
83 95Right-handed alpha
Helix 4
AA4
A
96 99Right-handed 310
Helix 5
AA5
A
108 114Right-handed alpha
Helix 6
AA6
A
115 118Right-handed 310
Helix 7
AA7
A
132 146Right-handed alpha
Helix 8
AA8
A
154 159Right-handed alpha
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
175 179Right-handed 310
Helix 11
AB2
A
200 212Right-handed alpha
Helix 12
AB3
A
223 234Right-handed alpha
Helix 13
AB4
A
247 256Right-handed alpha
Helix 14
AB5
A
272 280Right-handed alpha
Helix 15
AB6
A
291 296Right-handed alpha
Helix 16
AB7
A
309 318Right-handed alpha
Helix 17
AB8
A
319 323Right-handed 310
Helix 18
AB9
A
324 336Right-handed alpha
Helix 19
AC1
A
337 353Right-handed alpha
Helix 20
AC2
B
23 37Right-handed alpha
Helix 21
AC3
B
67 71Right-handed 310
Helix 22
AC4
B
83 95Right-handed alpha
Helix 23
AC5
B
96 99Right-handed 310
Helix 24
AC6
B
108 114Right-handed alpha
Helix 25
AC7
B
115 118Right-handed 310
Helix 26
AC8
B
132 146Right-handed alpha
Helix 27
AC9
B
154 159Right-handed alpha
Helix 28
AD1
B
163 167Right-handed 310
Helix 29
AD2
B
175 179Right-handed 310
Helix 30
AD3
B
207 212Right-handed 310
Helix 31
AD4
B
246 256Right-handed alpha
Helix 32
AD5
B
273 280Right-handed alpha
Helix 33
AD6
B
291 296Right-handed alpha
Helix 34
AD7
B
311 318Right-handed alpha
Helix 35
AD8
B
319 323Right-handed 310
Helix 36
AD9
B
324 337Right-handed alpha
Helix 37
AE1
B
337 350Right-handed alpha
Helix 38
AE2
B
351 354Right-handed 310
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There are 5 sheets in PDB entry 5ZER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
41 47parallel
Strand 3
A
5 9parallel
Strand 4
A
101 104parallel
Strand 5
A
122 125parallel
Strand 6
A
150 152parallel
Strand 7
A
168 169parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
215 218parallel
Strand 3
A
189 192parallel
Strand 4
A
259 262parallel
Strand 5
A
284 287parallel
Strand 6
A
302 305parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
41 47parallel
Strand 3
B
5 9parallel
Strand 4
B
101 104parallel
Strand 5
B
122 125parallel
Strand 6
B
150 152parallel
Strand 7
B
168 169parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
216 218parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 261first strand
Strand 2
B
284 287parallel
Strand 3
B
302 305parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il