Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZF1 entry

There are 2 chains in PDB entry 5ZF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 299
B
 MET 1LYS 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5ZF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
48 61Right-handed alpha
Helix 3
AA3
A
74 88Right-handed alpha
Helix 4
AA4
A
105 113Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
123 132Right-handed alpha
Helix 7
AA7
A
139 152Right-handed alpha
Helix 8
AA8
A
170 180Right-handed alpha
Helix 9
AA9
A
202 213Right-handed alpha
Helix 10
AB1
A
227 231Right-handed 310
Helix 11
AB2
A
259 264Right-handed alpha
Helix 12
AB3
A
276 299Right-handed alpha
Helix 13
AB4
B
6 27Right-handed alpha
Helix 14
AB5
B
43 61Right-handed alpha
Helix 15
AB6
B
74 88Right-handed alpha
Helix 16
AB7
B
105 113Right-handed alpha
Helix 17
AB8
B
114 118Right-handed 310
Helix 18
AB9
B
123 132Right-handed alpha
Helix 19
AC1
B
139 152Right-handed alpha
Helix 20
AC2
B
170 179Right-handed alpha
Helix 21
AC3
B
202 212Right-handed alpha
Helix 22
AC4
B
227 231Right-handed 310
Helix 23
AC5
B
259 264Right-handed alpha
Helix 24
AC6
B
276 299Right-handed alpha
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There are 3 sheets in PDB entry 5ZF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
269 270parallel
Strand 3
A
236 239parallel
Strand 4
A
215 218parallel
Strand 5
A
160 164parallel
Strand 6
A
193 197parallel
Strand 7
B
193 197anti-parallel
Strand 8
B
160 164parallel
Strand 9
B
215 218parallel
Strand 10
B
236 239parallel
Strand 11
B
269 270parallel
Strand 12
B
3 4parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
34 40parallel
Strand 3
A
93 96parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 69first strand
Strand 2
B
34 40parallel
Strand 3
B
93 96parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il