Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZFJ entry

There are 4 chains in PDB entry 5ZFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	THR 225
B	SER 27	THR 225
C	SER 27	THR 225
D	SER 27	THR 225

There are no helices in PDB entry 5ZFJ

There are 13 sheets in PDB entry 5ZFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	212	224	anti-parallel
Strand 3	A	98	103	anti-parallel
Strand 4	A	76	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	212	224	anti-parallel
Strand 3	A	127	137	anti-parallel
Strand 4	A	177	186	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	197	204	anti-parallel
Strand 4	A	153	159	anti-parallel
Strand 5	A	162	168	anti-parallel
Strand 6	C	162	168	anti-parallel
Strand 7	C	153	159	anti-parallel
Strand 8	C	197	204	anti-parallel
Strand 9	C	113	122	anti-parallel
Strand 10	C	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	212	224	anti-parallel
Strand 3	B	98	103	anti-parallel
Strand 4	B	76	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	212	224	anti-parallel
Strand 3	B	127	136	anti-parallel
Strand 4	B	178	186	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	113	122	anti-parallel
Strand 3	B	197	204	anti-parallel
Strand 4	B	153	159	anti-parallel
Strand 5	B	162	168	anti-parallel
Strand 6	D	162	168	anti-parallel
Strand 7	D	153	159	anti-parallel
Strand 8	D	197	204	anti-parallel
Strand 9	D	113	122	anti-parallel
Strand 10	D	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	212	224	anti-parallel
Strand 3	C	98	103	anti-parallel
Strand 4	C	76	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	212	224	anti-parallel
Strand 3	C	127	136	anti-parallel
Strand 4	C	178	186	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	212	224	anti-parallel
Strand 3	D	98	103	anti-parallel
Strand 4	D	76	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	212	224	anti-parallel
Strand 3	D	127	137	anti-parallel
Strand 4	D	177	186	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZFJ