Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZFM entry

There are 4 chains in PDB entry 5ZFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 249
B
 THR 2ALA 249
C
 THR 2ALA 249
D
 THR 2ALA 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 5ZFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
41 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
116 134Right-handed alpha
Helix 7
AA7
A
155 178Right-handed alpha
Helix 8
AA8
A
199 201Right-handed 310
Helix 9
AA9
A
202 209Right-handed alpha
Helix 10
AB1
A
217 230Right-handed alpha
Helix 11
AB2
A
231 234Right-handed 310
Helix 12
AB3
B
17 30Right-handed alpha
Helix 13
AB4
B
41 53Right-handed alpha
Helix 14
AB5
B
66 82Right-handed alpha
Helix 15
AB6
B
99 103Right-handed 310
Helix 16
AB7
B
104 116Right-handed alpha
Helix 17
AB8
B
116 134Right-handed alpha
Helix 18
AB9
B
155 178Right-handed alpha
Helix 19
AC1
B
199 201Right-handed 310
Helix 20
AC2
B
202 208Right-handed alpha
Helix 21
AC3
B
217 230Right-handed alpha
Helix 22
AC4
B
231 234Right-handed 310
Helix 23
AC5
C
17 30Right-handed alpha
Helix 24
AC6
C
41 53Right-handed alpha
Helix 25
AC7
C
66 82Right-handed alpha
Helix 26
AC8
C
99 103Right-handed 310
Helix 27
AC9
C
104 116Right-handed alpha
Helix 28
AD1
C
116 134Right-handed alpha
Helix 29
AD2
C
155 179Right-handed alpha
Helix 30
AD3
C
199 209Right-handed alpha
Helix 31
AD4
C
217 230Right-handed alpha
Helix 32
AD5
C
231 234Right-handed 310
Helix 33
AD6
D
17 30Right-handed alpha
Helix 34
AD7
D
41 53Right-handed alpha
Helix 35
AD8
D
66 82Right-handed alpha
Helix 36
AD9
D
99 103Right-handed 310
Helix 37
AE1
D
104 116Right-handed alpha
Helix 38
AE2
D
116 134Right-handed alpha
Helix 39
AE3
D
155 179Right-handed alpha
Helix 40
AE4
D
201 209Right-handed alpha
Helix 41
AE5
D
217 230Right-handed alpha
Helix 42
AE6
D
231 234Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5ZFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
86 89parallel
Strand 5
A
137 143parallel
Strand 6
A
182 190parallel
Strand 7
A
240 243parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
86 89parallel
Strand 5
B
137 143parallel
Strand 6
B
182 190parallel
Strand 7
B
240 243parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
33 38parallel
Strand 3
C
9 13parallel
Strand 4
C
86 89parallel
Strand 5
C
137 143parallel
Strand 6
C
182 190parallel
Strand 7
C
240 243parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
33 38parallel
Strand 3
D
9 13parallel
Strand 4
D
86 89parallel
Strand 5
D
138 143parallel
Strand 6
D
183 190parallel
Strand 7
D
240 243parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il