Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZFQ entry

There are 2 chains in PDB entry 5ZFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -6SER 353
B
 LEU -6SER 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5ZFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
136 152Right-handed alpha
Helix 7
AA7
A
185 192Right-handed alpha
Helix 8
AA8
A
193 196Right-handed 310
Helix 9
AA9
A
208 221Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
A
249 260Right-handed alpha
Helix 12
AB3
A
288 297Right-handed alpha
Helix 13
AB4
A
299 301Right-handed 310
Helix 14
AB5
A
302 309Right-handed alpha
Helix 15
AB6
A
318 329Right-handed alpha
Helix 16
AB7
A
333 341Right-handed alpha
Helix 17
AB8
A
343 353Right-handed alpha
Helix 18
AB9
B
3 14Right-handed alpha
Helix 19
AC1
B
44 55Right-handed alpha
Helix 20
AC2
B
57 68Right-handed alpha
Helix 21
AC3
B
106 111Right-handed alpha
Helix 22
AC4
B
113 120Right-handed alpha
Helix 23
AC5
B
136 152Right-handed alpha
Helix 24
AC6
B
185 192Right-handed alpha
Helix 25
AC7
B
193 196Right-handed 310
Helix 26
AC8
B
208 221Right-handed alpha
Helix 27
AC9
B
233 244Right-handed alpha
Helix 28
AD1
B
246 248Right-handed 310
Helix 29
AD2
B
249 260Right-handed alpha
Helix 30
AD3
B
288 297Right-handed alpha
Helix 31
AD4
B
299 301Right-handed 310
Helix 32
AD5
B
302 309Right-handed alpha
Helix 33
AD6
B
310 315Right-handed alpha
Helix 34
AD7
B
318 329Right-handed alpha
Helix 35
AD8
B
333 341Right-handed alpha
Helix 36
AD9
B
343 353Right-handed alpha
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There are 4 sheets in PDB entry 5ZFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
28 31anti-parallel
Strand 3
A
18 21anti-parallel
Strand 4
A
92 100anti-parallel
Strand 5
A
80 89anti-parallel
Strand 6
A
69 76anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
155 160parallel
Strand 3
A
200 205parallel
Strand 4
A
224 229parallel
Strand 5
A
125 130parallel
Strand 6
A
261 271parallel
Strand 7
A
278 285anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
28 31anti-parallel
Strand 3
B
18 21anti-parallel
Strand 4
B
92 100anti-parallel
Strand 5
B
80 89anti-parallel
Strand 6
B
69 76anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 178first strand
Strand 2
B
155 160parallel
Strand 3
B
200 203parallel
Strand 4
B
224 229parallel
Strand 5
B
125 130parallel
Strand 6
B
261 271parallel
Strand 7
B
278 285anti-parallel
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