Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZFR entry

There are 3 chains in PDB entry 5ZFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 181ASP 568
B
 GLU 179ASP 568
C
 ASP 180ASP 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5ZFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
182 197Right-handed alpha
Helix 2
AA2
A
228 230Right-handed 310
Helix 3
AA3
A
231 243Right-handed alpha
Helix 4
AA4
A
296 301Right-handed 310
Helix 5
AA5
A
303 315Right-handed alpha
Helix 6
AA6
A
330 343Right-handed alpha
Helix 7
AA7
A
369 373Right-handed 310
Helix 8
AA8
A
375 385Right-handed alpha
Helix 9
AA9
A
398 411Right-handed alpha
Helix 10
AB1
A
423 435Right-handed alpha
Helix 11
AB2
A
437 444Right-handed alpha
Helix 12
AB3
A
468 476Right-handed alpha
Helix 13
AB4
A
478 482Right-handed 310
Helix 14
AB5
A
514 523Right-handed alpha
Helix 15
AB6
A
526 537Right-handed alpha
Helix 16
AB7
A
541 552Right-handed alpha
Helix 17
AB8
A
556 564Right-handed alpha
Helix 18
AB9
B
182 197Right-handed alpha
Helix 19
AC1
B
228 230Right-handed 310
Helix 20
AC2
B
231 244Right-handed alpha
Helix 21
AC3
B
289 293Right-handed 310
Helix 22
AC4
B
296 301Right-handed 310
Helix 23
AC5
B
303 315Right-handed alpha
Helix 24
AC6
B
330 343Right-handed alpha
Helix 25
AC7
B
369 373Right-handed 310
Helix 26
AC8
B
375 385Right-handed alpha
Helix 27
AC9
B
398 411Right-handed alpha
Helix 28
AD1
B
423 435Right-handed alpha
Helix 29
AD2
B
437 444Right-handed alpha
Helix 30
AD3
B
468 476Right-handed alpha
Helix 31
AD4
B
478 482Right-handed 310
Helix 32
AD5
B
514 523Right-handed alpha
Helix 33
AD6
B
526 537Right-handed alpha
Helix 34
AD7
B
541 552Right-handed alpha
Helix 35
AD8
B
556 564Right-handed alpha
Helix 36
AD9
C
181 197Right-handed alpha
Helix 37
AE1
C
228 230Right-handed 310
Helix 38
AE2
C
231 243Right-handed alpha
Helix 39
AE3
C
296 301Right-handed 310
Helix 40
AE4
C
303 315Right-handed alpha
Helix 41
AE5
C
330 343Right-handed alpha
Helix 42
AE6
C
369 373Right-handed 310
Helix 43
AE7
C
375 385Right-handed alpha
Helix 44
AE8
C
398 411Right-handed alpha
Helix 45
AE9
C
423 435Right-handed alpha
Helix 46
AF1
C
437 444Right-handed alpha
Helix 47
AF2
C
468 476Right-handed alpha
Helix 48
AF3
C
478 482Right-handed 310
Helix 49
AF4
C
514 523Right-handed alpha
Helix 50
AF5
C
526 537Right-handed alpha
Helix 51
AF6
C
541 552Right-handed alpha
Helix 52
AF7
C
556 564Right-handed alpha
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There are 9 sheets in PDB entry 5ZFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
280 288anti-parallel
Strand 5
A
269 277anti-parallel
Strand 6
A
254 259anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 367first strand
Strand 2
A
349 353parallel
Strand 3
A
390 393parallel
Strand 4
A
414 419parallel
Strand 5
A
319 324parallel
Strand 6
A
445 457parallel
Strand 7
A
501 512anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
488 490anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
211 217anti-parallel
Strand 3
B
201 206anti-parallel
Strand 4
B
280 288anti-parallel
Strand 5
B
268 277anti-parallel
Strand 6
B
254 260anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 367first strand
Strand 2
B
349 353parallel
Strand 3
B
390 393parallel
Strand 4
B
414 417parallel
Strand 5
B
319 324parallel
Strand 6
B
445 457parallel
Strand 7
B
501 512anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
488 490anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 225first strand
Strand 2
C
211 217anti-parallel
Strand 3
C
201 206anti-parallel
Strand 4
C
280 288anti-parallel
Strand 5
C
268 277anti-parallel
Strand 6
C
254 260anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
363 367first strand
Strand 2
C
349 353parallel
Strand 3
C
390 393parallel
Strand 4
C
414 419parallel
Strand 5
C
319 324parallel
Strand 6
C
445 457parallel
Strand 7
C
501 512anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
462 464first strand
Strand 2
C
488 490anti-parallel
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