Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZG8 entry

There is 1 chain in PDB entry 5ZG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5ZG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed 310
Helix 2
AA2
A
53 62Right-handed alpha
Helix 3
AA3
A
110 117Right-handed alpha
Helix 4
AA4
A
117 122Right-handed alpha
Helix 5
AA5
A
124 148Right-handed alpha
Helix 6
AA6
A
186 198Right-handed alpha
Helix 7
AA7
A
232 255Right-handed alpha
Helix 8
AA8
A
255 263Right-handed alpha
Helix 9
AA9
A
265 268Right-handed 310
Helix 10
AB1
A
269 275Right-handed alpha
Helix 11
AB2
A
282 296Right-handed alpha
Helix 12
AB3
A
309 318Right-handed alpha
Helix 13
AB4
A
330 334Right-handed 310
Helix 14
AB5
A
371 382Right-handed alpha
Helix 15
AB6
A
386 388Right-handed 310
Helix 16
AB7
A
389 398Right-handed alpha
Helix 17
AB8
A
410 419Right-handed alpha
Helix 18
AB9
A
422 427Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5ZG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 28first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
85 96parallel
Strand 5
A
68 77anti-parallel
Strand 6
A
15 28anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
199 207parallel
Strand 3
A
220 229anti-parallel
Strand 4
A
403 409anti-parallel
Strand 5
A
360 368anti-parallel
Strand 6
A
350 355anti-parallel
Strand 7
A
324 327anti-parallel
Strand 8
A
279 281parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
344 348anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il