Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZGB entry

There are 17 chains in PDB entry 5ZGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 8	GLY 748
B	ALA 2	SER 732
C	ALA 2	TYR 81
D	CYS 21	ARG 139
E	ILE 2	LYS 62
F	VAL 30	SER 183
I	SER 2	LYS 32
J	MET 1	TYR 38
K	MET 2	ILE 60
L	PRO 20	LEU 138
M	ILE 2	LEU 28
O	TYR 40	TYR 122
1	ALA 5	PRO 173
2	PRO 19	PHE 193
3	VAL 13	VAL 182
4	PRO 4	PRO 173
5	PRO 19	PHE 193

There are127 helices in PDB entry 5ZGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed 310
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	61	93	Right-handed alpha
Helix 5	AA5	A	96	101	Right-handed alpha
Helix 6	AA6	A	119	124	Right-handed 310
Helix 7	AA7	A	139	148	Right-handed alpha
Helix 8	AA8	A	151	178	Right-handed alpha
Helix 9	AA9	A	183	188	Right-handed alpha
Helix 10	AB1	A	189	198	Right-handed alpha
Helix 11	AB2	A	201	216	Right-handed alpha
Helix 12	AB3	A	216	224	Right-handed alpha
Helix 13	AB4	A	236	240	Right-handed 310
Helix 14	AB5	A	243	248	Right-handed alpha
Helix 15	AB6	A	250	256	Right-handed 310
Helix 16	AB7	A	257	262	Right-handed alpha
Helix 17	AB8	A	266	270	Right-handed 310
Helix 18	AB9	A	286	306	Right-handed alpha
Helix 19	AC1	A	317	323	Right-handed alpha
Helix 20	AC2	A	336	341	Right-handed alpha
Helix 21	AC3	A	344	369	Right-handed alpha
Helix 22	AC4	A	379	411	Right-handed alpha
Helix 23	AC5	A	421	428	Right-handed alpha
Helix 24	AC6	A	429	461	Right-handed alpha
Helix 25	AC7	A	463	467	Right-handed 310
Helix 26	AC8	A	477	489	Right-handed alpha
Helix 27	AC9	A	489	494	Right-handed alpha
Helix 28	AD1	A	527	552	Right-handed alpha
Helix 29	AD2	A	583	610	Right-handed alpha
Helix 30	AD3	A	620	622	Right-handed 310
Helix 31	AD4	A	639	646	Right-handed alpha
Helix 32	AD5	A	648	650	Right-handed 310
Helix 33	AD6	A	651	656	Right-handed alpha
Helix 34	AD7	A	662	685	Right-handed alpha
Helix 35	AD8	A	686	703	Right-handed alpha
Helix 36	AD9	A	716	746	Right-handed alpha
Helix 37	AE1	B	9	14	Right-handed alpha
Helix 38	AE2	B	18	27	Right-handed alpha
Helix 39	AE3	B	39	71	Right-handed alpha
Helix 40	AE4	B	73	80	Right-handed alpha
Helix 41	AE5	B	100	104	Right-handed 310
Helix 42	AE6	B	117	126	Right-handed alpha
Helix 43	AE7	B	130	154	Right-handed alpha
Helix 44	AE8	B	156	160	Right-handed 310
Helix 45	AE9	B	162	167	Right-handed alpha
Helix 46	AF1	B	168	177	Right-handed alpha
Helix 47	AF2	B	181	193	Right-handed alpha
Helix 48	AF3	B	195	201	Right-handed alpha
Helix 49	AF4	B	227	233	Right-handed 310
Helix 50	AF5	B	267	287	Right-handed alpha
Helix 51	AF6	B	299	304	Right-handed alpha
Helix 52	AF7	B	321	326	Right-handed alpha
Helix 53	AF8	B	328	351	Right-handed alpha
Helix 54	AF9	B	364	395	Right-handed alpha
Helix 55	AG1	B	404	412	Right-handed alpha
Helix 56	AG2	B	412	429	Right-handed alpha
Helix 57	AG3	B	431	444	Right-handed alpha
Helix 58	AG4	B	455	465	Right-handed alpha
Helix 59	AG5	B	481	487	Right-handed alpha
Helix 60	AG6	B	492	501	Right-handed alpha
Helix 61	AG7	B	511	538	Right-handed alpha
Helix 62	AG8	B	547	552	Right-handed 310
Helix 63	AG9	B	570	600	Right-handed alpha
Helix 64	AH1	B	603	610	Right-handed alpha
Helix 65	AH2	B	613	621	Right-handed alpha
Helix 66	AH3	B	621	626	Right-handed alpha
Helix 67	AH4	B	626	631	Right-handed alpha
Helix 68	AH5	B	641	663	Right-handed alpha
Helix 69	AH6	B	665	671	Right-handed alpha
Helix 70	AH7	B	672	683	Right-handed alpha
Helix 71	AH8	B	701	731	Right-handed alpha
Helix 72	AH9	C	15	21	Right-handed alpha
Helix 73	AI1	C	44	48	Right-handed 310
Helix 74	AI2	C	52	57	Right-handed alpha
Helix 75	AI3	C	73	78	Right-handed alpha
Helix 76	AI4	D	61	74	Right-handed alpha
Helix 77	AI5	D	119	123	Right-handed 310
Helix 78	AI6	D	125	130	Right-handed alpha
Helix 79	AI7	F	33	36	Right-handed 310
Helix 80	AI8	F	37	54	Right-handed alpha
Helix 81	AI9	F	55	58	Right-handed 310
Helix 82	AJ1	F	62	81	Right-handed alpha
Helix 83	AJ2	F	107	133	Right-handed alpha
Helix 84	AJ3	F	137	144	Right-handed alpha
Helix 85	AJ4	F	146	157	Right-handed alpha
Helix 86	AJ5	F	160	169	Right-handed alpha
Helix 87	AJ6	I	6	16	Right-handed alpha
Helix 88	AJ7	I	17	29	Right-handed alpha
Helix 89	AJ8	I	30	32	Right-handed 310
Helix 90	AJ9	J	2	7	Right-handed alpha
Helix 91	AK1	J	9	31	Right-handed alpha
Helix 92	AK2	K	10	27	Right-handed alpha
Helix 93	AK3	K	32	57	Right-handed alpha
Helix 94	AK4	L	24	33	Right-handed alpha
Helix 95	AK5	L	42	58	Right-handed alpha
Helix 96	AK6	L	59	64	Right-handed alpha
Helix 97	AK7	L	75	100	Right-handed alpha
Helix 98	AK8	L	111	135	Right-handed alpha
Helix 99	AK9	M	4	26	Right-handed alpha
Helix 100	AL1	O	47	60	Right-handed alpha
Helix 101	AL2	O	73	78	Right-handed alpha
Helix 102	AL3	O	94	118	Right-handed alpha
Helix 103	AL4	1	35	57	Right-handed alpha
Helix 104	AL5	1	77	85	Right-handed alpha
Helix 105	AL6	1	87	100	Right-handed alpha
Helix 106	AL7	1	136	159	Right-handed alpha
Helix 107	AL8	2	52	77	Right-handed alpha
Helix 108	AL9	2	96	101	Right-handed alpha
Helix 109	AM1	2	105	121	Right-handed alpha
Helix 110	AM2	2	121	131	Right-handed alpha
Helix 111	AM3	2	151	178	Right-handed alpha
Helix 112	AM4	2	185	191	Right-handed alpha
Helix 113	AM5	3	39	43	Right-handed 310
Helix 114	AM6	3	44	68	Right-handed alpha
Helix 115	AM7	3	86	91	Right-handed alpha
Helix 116	AM8	3	96	121	Right-handed alpha
Helix 117	AM9	3	141	168	Right-handed alpha
Helix 118	AN1	4	35	57	Right-handed alpha
Helix 119	AN2	4	77	85	Right-handed alpha
Helix 120	AN3	4	87	100	Right-handed alpha
Helix 121	AN4	4	136	159	Right-handed alpha
Helix 122	AN5	5	52	77	Right-handed alpha
Helix 123	AN6	5	96	101	Right-handed alpha
Helix 124	AN7	5	105	121	Right-handed alpha
Helix 125	AN8	5	121	131	Right-handed alpha
Helix 126	AN9	5	151	178	Right-handed alpha
Helix 127	AO1	5	185	191	Right-handed alpha

There are 8 sheets in PDB entry 5ZGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	180	182	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	617	618	first strand
Strand 2	A	624	625	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	F	93	95	parallel
Strand 3	F	86	87	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	B	637	638	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	59	first strand
Strand 2	D	27	33	anti-parallel
Strand 3	D	82	86	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	22	27	anti-parallel
Strand 4	E	7	9	anti-parallel
Strand 5	E	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZGB