Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZGC entry

There are 18 chains in PDB entry 5ZGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 122	LEU 394
B	LYS 122	LYS 393
C	LYS 122	LEU 394
D	SER 124	LEU 394
E	LYS 122	LEU 394
F	GLY 121	LEU 394
G	GLY 11	ALA 15
G	ARG 17	VAL 21
H	GLY 11	ALA 15
H	ARG 17	ARG 19
I	GLY 13	ALA 15
I	ARG 17	ARG 19
J	GLY 14	ALA 15
J	ARG 17	HIS 18
K	GLY 13	ALA 15
K	ARG 17	ARG 19
L	GLY 14	ALA 15
L	ARG 17	HIS 18

There are 89 helices in PDB entry 5ZGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	124	134	Right-handed alpha
Helix 2	AA2	A	146	153	Right-handed 310
Helix 3	AA3	A	175	180	Right-handed 310
Helix 4	AA4	A	181	188	Right-handed alpha
Helix 5	AA5	A	189	200	Right-handed alpha
Helix 6	AA6	A	207	219	Right-handed alpha
Helix 7	AA7	A	232	237	Right-handed alpha
Helix 8	AA8	A	240	242	Right-handed 310
Helix 9	AA9	A	265	274	Right-handed alpha
Helix 10	AB1	A	299	303	Right-handed 310
Helix 11	AB2	A	304	309	Right-handed alpha
Helix 12	AB3	A	327	334	Right-handed 310
Helix 13	AB4	A	349	354	Right-handed alpha
Helix 14	AB5	A	365	378	Right-handed alpha
Helix 15	AB6	A	379	394	Right-handed alpha
Helix 16	AB7	B	124	134	Right-handed alpha
Helix 17	AB8	B	146	153	Right-handed 310
Helix 18	AB9	B	175	180	Right-handed 310
Helix 19	AC1	B	181	188	Right-handed alpha
Helix 20	AC2	B	189	200	Right-handed alpha
Helix 21	AC3	B	207	219	Right-handed alpha
Helix 22	AC4	B	232	237	Right-handed alpha
Helix 23	AC5	B	240	242	Right-handed 310
Helix 24	AC6	B	265	274	Right-handed alpha
Helix 25	AC7	B	299	303	Right-handed 310
Helix 26	AC8	B	304	309	Right-handed alpha
Helix 27	AC9	B	326	334	Right-handed 310
Helix 28	AD1	B	349	354	Right-handed alpha
Helix 29	AD2	B	365	378	Right-handed alpha
Helix 30	AD3	B	379	393	Right-handed alpha
Helix 31	AD4	C	124	134	Right-handed alpha
Helix 32	AD5	C	146	153	Right-handed 310
Helix 33	AD6	C	175	180	Right-handed 310
Helix 34	AD7	C	181	188	Right-handed alpha
Helix 35	AD8	C	189	199	Right-handed alpha
Helix 36	AD9	C	207	219	Right-handed alpha
Helix 37	AE1	C	232	238	Right-handed alpha
Helix 38	AE2	C	240	242	Right-handed 310
Helix 39	AE3	C	265	274	Right-handed alpha
Helix 40	AE4	C	299	303	Right-handed 310
Helix 41	AE5	C	304	309	Right-handed alpha
Helix 42	AE6	C	327	333	Right-handed 310
Helix 43	AE7	C	349	354	Right-handed alpha
Helix 44	AE8	C	365	378	Right-handed alpha
Helix 45	AE9	C	379	394	Right-handed alpha
Helix 46	AF1	D	125	134	Right-handed alpha
Helix 47	AF2	D	145	150	Right-handed alpha
Helix 48	AF3	D	151	153	Right-handed 310
Helix 49	AF4	D	175	180	Right-handed 310
Helix 50	AF5	D	181	188	Right-handed alpha
Helix 51	AF6	D	189	199	Right-handed alpha
Helix 52	AF7	D	207	219	Right-handed alpha
Helix 53	AF8	D	232	237	Right-handed alpha
Helix 54	AF9	D	268	274	Right-handed alpha
Helix 55	AG1	D	299	303	Right-handed 310
Helix 56	AG2	D	304	309	Right-handed alpha
Helix 57	AG3	D	328	333	Right-handed 310
Helix 58	AG4	D	349	354	Right-handed alpha
Helix 59	AG5	D	365	377	Right-handed alpha
Helix 60	AG6	D	379	394	Right-handed alpha
Helix 61	AG7	E	124	134	Right-handed alpha
Helix 62	AG8	E	146	153	Right-handed 310
Helix 63	AG9	E	162	169	Right-handed alpha
Helix 64	AH1	E	175	180	Right-handed 310
Helix 65	AH2	E	181	188	Right-handed alpha
Helix 66	AH3	E	189	200	Right-handed alpha
Helix 67	AH4	E	207	219	Right-handed alpha
Helix 68	AH5	E	232	237	Right-handed alpha
Helix 69	AH6	E	240	242	Right-handed 310
Helix 70	AH7	E	265	274	Right-handed alpha
Helix 71	AH8	E	299	303	Right-handed 310
Helix 72	AH9	E	304	312	Right-handed alpha
Helix 73	AI1	E	327	333	Right-handed 310
Helix 74	AI2	E	349	354	Right-handed alpha
Helix 75	AI3	E	365	378	Right-handed alpha
Helix 76	AI4	E	379	394	Right-handed alpha
Helix 77	AI5	F	124	135	Right-handed alpha
Helix 78	AI6	F	146	153	Right-handed 310
Helix 79	AI7	F	192	200	Right-handed alpha
Helix 80	AI8	F	207	219	Right-handed alpha
Helix 81	AI9	F	232	237	Right-handed alpha
Helix 82	AJ1	F	240	242	Right-handed 310
Helix 83	AJ2	F	268	274	Right-handed alpha
Helix 84	AJ3	F	299	302	Right-handed 310
Helix 85	AJ4	F	303	309	Right-handed alpha
Helix 86	AJ5	F	327	333	Right-handed 310
Helix 87	AJ6	F	349	354	Right-handed alpha
Helix 88	AJ7	F	365	378	Right-handed alpha
Helix 89	AJ8	F	379	394	Right-handed alpha

There are 13 sheets in PDB entry 5ZGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	222	227	parallel
Strand 3	A	140	144	parallel
Strand 4	A	314	318	parallel
Strand 5	A	340	343	parallel
Strand 6	A	359	361	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	249	256	anti-parallel
Strand 3	A	287	291	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	G	17	18	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	222	227	parallel
Strand 3	B	140	144	parallel
Strand 4	B	314	318	parallel
Strand 5	B	340	344	parallel
Strand 6	B	359	363	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	249	256	anti-parallel
Strand 3	B	287	291	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	H	17	18	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	222	227	parallel
Strand 3	C	140	144	parallel
Strand 4	C	314	318	parallel
Strand 5	C	340	344	parallel
Strand 6	C	359	363	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	253	256	anti-parallel
Strand 3	C	287	289	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	222	227	parallel
Strand 3	D	140	144	parallel
Strand 4	D	314	318	parallel
Strand 5	D	340	343	parallel
Strand 6	D	359	361	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	253	256	anti-parallel
Strand 3	D	287	289	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	246	first strand
Strand 2	E	222	227	parallel
Strand 3	E	140	144	parallel
Strand 4	E	314	318	parallel
Strand 5	E	340	344	parallel
Strand 6	E	359	363	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	264	first strand
Strand 2	E	249	256	anti-parallel
Strand 3	E	287	291	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	246	first strand
Strand 2	F	222	227	parallel
Strand 3	F	140	144	parallel
Strand 4	F	314	318	parallel
Strand 5	F	340	344	parallel
Strand 6	F	359	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZGC