Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZGO entry

There are 6 chains in PDB entry 5ZGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 178
B	MET 1	GLU 178
C	MET 1	GLU 178
D	MET 1	GLU 178
E	MET 1	GLU 178
F	MET 1	GLU 178

There are 30 helices in PDB entry 5ZGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	48	Right-handed alpha
Helix 2	AA2	A	60	62	Right-handed 310
Helix 3	AA3	A	63	75	Right-handed alpha
Helix 4	AA4	A	111	115	Right-handed 310
Helix 5	AA5	A	133	146	Right-handed alpha
Helix 6	AA6	B	34	47	Right-handed alpha
Helix 7	AA7	B	60	62	Right-handed 310
Helix 8	AA8	B	63	75	Right-handed alpha
Helix 9	AA9	B	111	118	Right-handed 310
Helix 10	AB1	B	134	146	Right-handed alpha
Helix 11	AB2	C	34	48	Right-handed alpha
Helix 12	AB3	C	60	62	Right-handed 310
Helix 13	AB4	C	63	75	Right-handed alpha
Helix 14	AB5	C	111	115	Right-handed 310
Helix 15	AB6	C	134	146	Right-handed alpha
Helix 16	AB7	D	34	48	Right-handed alpha
Helix 17	AB8	D	60	62	Right-handed 310
Helix 18	AB9	D	63	75	Right-handed alpha
Helix 19	AC1	D	111	115	Right-handed 310
Helix 20	AC2	D	133	146	Right-handed alpha
Helix 21	AC3	E	34	48	Right-handed alpha
Helix 22	AC4	E	63	75	Right-handed alpha
Helix 23	AC5	E	111	118	Right-handed 310
Helix 24	AC6	E	135	146	Right-handed alpha
Helix 25	AC7	F	34	47	Right-handed alpha
Helix 26	AC8	F	60	62	Right-handed 310
Helix 27	AC9	F	63	75	Right-handed alpha
Helix 28	AD1	F	111	113	Right-handed 310
Helix 29	AD2	F	114	119	Right-handed alpha
Helix 30	AD3	F	135	145	Right-handed alpha

There are 24 sheets in PDB entry 5ZGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	11	19	anti-parallel
Strand 3	A	25	27	anti-parallel
Strand 4	A	174	175	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	55	58	parallel
Strand 3	A	122	126	parallel
Strand 4	A	149	154	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	105	110	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	157	159	parallel
Strand 3	A	170	172	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	11	19	anti-parallel
Strand 3	B	25	27	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	55	58	parallel
Strand 3	B	122	126	parallel
Strand 4	B	149	154	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	105	110	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	157	159	parallel
Strand 3	B	170	172	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	11	21	anti-parallel
Strand 3	C	24	27	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	55	58	parallel
Strand 3	C	122	126	parallel
Strand 4	C	149	154	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	107	110	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	157	159	parallel
Strand 3	C	171	172	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	11	19	anti-parallel
Strand 3	D	25	27	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	55	58	parallel
Strand 3	D	122	126	parallel
Strand 4	D	149	154	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	97	first strand
Strand 2	D	106	110	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	157	159	parallel
Strand 3	D	170	172	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	8	first strand
Strand 2	E	11	19	anti-parallel
Strand 3	E	25	27	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	55	58	parallel
Strand 3	E	122	126	parallel
Strand 4	E	149	154	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	97	first strand
Strand 2	E	106	110	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	157	159	parallel
Strand 3	E	170	172	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	8	first strand
Strand 2	F	11	19	anti-parallel
Strand 3	F	25	27	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	80	first strand
Strand 2	F	55	58	parallel
Strand 3	F	122	126	parallel
Strand 4	F	149	154	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	96	first strand
Strand 2	F	107	110	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	157	159	parallel
Strand 3	F	170	172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZGO