Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZH8 entry

There are 2 chains in PDB entry 5ZH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40GLN 397
B
 SER 46GLN 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5ZH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 56Right-handed alpha
Helix 2
AA2
A
73 86Right-handed alpha
Helix 3
AA3
A
128 143Right-handed alpha
Helix 4
AA4
A
151 156Right-handed alpha
Helix 5
AA5
A
166 172Right-handed alpha
Helix 6
AA6
A
188 200Right-handed alpha
Helix 7
AA7
A
202 206Right-handed 310
Helix 8
AA8
A
212 228Right-handed alpha
Helix 9
AA9
A
230 239Right-handed alpha
Helix 10
AB1
A
253 260Right-handed 310
Helix 11
AB2
A
278 282Right-handed 310
Helix 12
AB3
A
291 304Right-handed alpha
Helix 13
AB4
A
309 319Right-handed alpha
Helix 14
AB5
A
370 380Right-handed alpha
Helix 15
AB6
B
47 56Right-handed alpha
Helix 16
AB7
B
73 86Right-handed alpha
Helix 17
AB8
B
128 143Right-handed alpha
Helix 18
AB9
B
151 156Right-handed alpha
Helix 19
AC1
B
166 172Right-handed alpha
Helix 20
AC2
B
188 200Right-handed alpha
Helix 21
AC3
B
212 228Right-handed alpha
Helix 22
AC4
B
230 239Right-handed alpha
Helix 23
AC5
B
253 260Right-handed 310
Helix 24
AC6
B
278 282Right-handed 310
Helix 25
AC7
B
291 304Right-handed alpha
Helix 26
AC8
B
309 319Right-handed alpha
Helix 27
AC9
B
370 380Right-handed alpha
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There are 7 sheets in PDB entry 5ZH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
99 106anti-parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
359 365anti-parallel
Strand 5
A
349 355anti-parallel
Strand 6
A
340 346anti-parallel
Strand 7
A
333 335anti-parallel
Strand 8
A
329 330anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
115 116anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
288 290anti-parallel
Strand 3
A
248 250anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
271 273anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 106first strand
Strand 2
B
90 96anti-parallel
Strand 3
B
359 365anti-parallel
Strand 4
B
349 355anti-parallel
Strand 5
B
340 346anti-parallel
Strand 6
B
333 335anti-parallel
Strand 7
B
329 330anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
115 116anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
288 290anti-parallel
Strand 3
B
248 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il