Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZI4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZI4 entry

There are 2 chains in PDB entry 5ZI4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 339
B
 MET 1LEU 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 5ZI4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
61 67Right-handed alpha
Helix 4
AA4
A
85 108Right-handed alpha
Helix 5
AA5
A
119 135Right-handed alpha
Helix 6
AA6
A
138 140Right-handed 310
Helix 7
AA7
A
146 165Right-handed alpha
Helix 8
AA8
A
165 170Right-handed alpha
Helix 9
AA9
A
171 172Right-handed 310
Helix 10
AB1
A
173 179Right-handed 310
Helix 11
AB2
A
199 206Right-handed alpha
Helix 12
AB3
A
207 218Right-handed alpha
Helix 13
AB4
A
218 227Right-handed alpha
Helix 14
AB5
A
234 251Right-handed alpha
Helix 15
AB6
A
269 271Right-handed 310
Helix 16
AB7
A
273 282Right-handed alpha
Helix 17
AB8
A
305 309Right-handed 310
Helix 18
AB9
A
312 339Right-handed alpha
Helix 19
AC1
B
13 23Right-handed alpha
Helix 20
AC2
B
37 47Right-handed alpha
Helix 21
AC3
B
61 67Right-handed alpha
Helix 22
AC4
B
85 108Right-handed alpha
Helix 23
AC5
B
119 134Right-handed alpha
Helix 24
AC6
B
138 140Right-handed 310
Helix 25
AC7
B
146 165Right-handed alpha
Helix 26
AC8
B
165 171Right-handed alpha
Helix 27
AC9
B
173 179Right-handed 310
Helix 28
AD1
B
198 206Right-handed alpha
Helix 29
AD2
B
207 227Right-handed alpha
Helix 30
AD3
B
234 251Right-handed alpha
Helix 31
AD4
B
252 254Right-handed 310
Helix 32
AD5
B
269 271Right-handed 310
Helix 33
AD6
B
273 281Right-handed alpha
Helix 34
AD7
B
305 310Right-handed 310
Helix 35
AD8
B
312 337Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5ZI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
27 33parallel
Strand 3
A
2 7parallel
Strand 4
A
71 74parallel
Strand 5
A
112 115parallel
Strand 6
A
142 144parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 185first strand
Strand 2
A
192 196anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
288 296anti-parallel
Strand 3
A
299 303anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
27 33parallel
Strand 3
B
2 7parallel
Strand 4
B
71 74parallel
Strand 5
B
112 115parallel
Strand 6
B
142 144parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 185first strand
Strand 2
B
192 196anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 267first strand
Strand 2
B
288 296anti-parallel
Strand 3
B
299 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il