Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZI5 entry

There are 2 chains in PDB entry 5ZI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	VAL 862
B	SER 13	VAL 862

There are 66 helices in PDB entry 5ZI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	85	Right-handed 310
Helix 2	AA2	A	137	141	Right-handed 310
Helix 3	AA3	A	196	199	Right-handed 310
Helix 4	AA4	A	232	235	Right-handed 310
Helix 5	AA5	A	236	255	Right-handed alpha
Helix 6	AA6	A	287	289	Right-handed 310
Helix 7	AA7	A	297	314	Right-handed alpha
Helix 8	AA8	A	325	327	Right-handed 310
Helix 9	AA9	A	328	349	Right-handed alpha
Helix 10	AB1	A	349	358	Right-handed alpha
Helix 11	AB2	A	373	378	Right-handed 310
Helix 12	AB3	A	383	398	Right-handed alpha
Helix 13	AB4	A	398	413	Right-handed alpha
Helix 14	AB5	A	419	432	Right-handed alpha
Helix 15	AB6	A	434	437	Right-handed 310
Helix 16	AB7	A	438	444	Right-handed alpha
Helix 17	AB8	A	534	545	Right-handed alpha
Helix 18	AB9	A	547	568	Right-handed alpha
Helix 19	AC1	A	575	587	Right-handed alpha
Helix 20	AC2	A	592	601	Right-handed alpha
Helix 21	AC3	A	604	611	Right-handed alpha
Helix 22	AC4	A	616	648	Right-handed alpha
Helix 23	AC5	A	661	679	Right-handed alpha
Helix 24	AC6	A	682	698	Right-handed alpha
Helix 25	AC7	A	701	717	Right-handed alpha
Helix 26	AC8	A	720	732	Right-handed alpha
Helix 27	AC9	A	734	748	Right-handed alpha
Helix 28	AD1	A	752	761	Right-handed alpha
Helix 29	AD2	A	770	784	Right-handed alpha
Helix 30	AD3	A	793	810	Right-handed alpha
Helix 31	AD4	A	810	820	Right-handed alpha
Helix 32	AD5	A	821	827	Right-handed 310
Helix 33	AD6	A	828	845	Right-handed alpha
Helix 34	AD7	A	848	860	Right-handed alpha
Helix 35	AD8	B	137	141	Right-handed 310
Helix 36	AD9	B	196	200	Right-handed 310
Helix 37	AE1	B	236	255	Right-handed alpha
Helix 38	AE2	B	287	289	Right-handed 310
Helix 39	AE3	B	297	314	Right-handed alpha
Helix 40	AE4	B	328	349	Right-handed alpha
Helix 41	AE5	B	349	358	Right-handed alpha
Helix 42	AE6	B	373	378	Right-handed 310
Helix 43	AE7	B	383	398	Right-handed alpha
Helix 44	AE8	B	398	414	Right-handed alpha
Helix 45	AE9	B	419	432	Right-handed alpha
Helix 46	AF1	B	435	437	Right-handed 310
Helix 47	AF2	B	438	444	Right-handed alpha
Helix 48	AF3	B	534	545	Right-handed alpha
Helix 49	AF4	B	547	568	Right-handed alpha
Helix 50	AF5	B	575	588	Right-handed alpha
Helix 51	AF6	B	592	601	Right-handed alpha
Helix 52	AF7	B	604	611	Right-handed alpha
Helix 53	AF8	B	616	635	Right-handed alpha
Helix 54	AF9	B	635	648	Right-handed alpha
Helix 55	AG1	B	661	679	Right-handed alpha
Helix 56	AG2	B	682	698	Right-handed alpha
Helix 57	AG3	B	701	716	Right-handed alpha
Helix 58	AG4	B	716	732	Right-handed alpha
Helix 59	AG5	B	734	748	Right-handed alpha
Helix 60	AG6	B	752	762	Right-handed alpha
Helix 61	AG7	B	770	784	Right-handed alpha
Helix 62	AG8	B	793	810	Right-handed alpha
Helix 63	AG9	B	810	819	Right-handed alpha
Helix 64	AH1	B	820	823	Right-handed 310
Helix 65	AH2	B	828	844	Right-handed alpha
Helix 66	AH3	B	848	860	Right-handed alpha

There are 16 sheets in PDB entry 5ZI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	370	371	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	77	first strand
Strand 2	A	105	113	anti-parallel
Strand 3	A	43	52	anti-parallel
Strand 4	A	26	36	anti-parallel
Strand 5	A	152	161	parallel
Strand 6	A	184	195	anti-parallel
Strand 7	A	173	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	93	96	anti-parallel
Strand 3	A	87	89	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	128	132	anti-parallel
Strand 3	A	201	205	anti-parallel
Strand 4	A	167	170	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	215	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	263	268	parallel
Strand 4	A	281	285	parallel
Strand 5	A	275	276	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	417	418	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	508	first strand
Strand 2	A	463	470	anti-parallel
Strand 3	A	449	456	anti-parallel
Strand 4	A	528	530	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	499	first strand
Strand 2	A	477	485	anti-parallel
Strand 3	A	515	518	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	370	371	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	105	113	anti-parallel
Strand 3	B	43	52	anti-parallel
Strand 4	B	26	36	anti-parallel
Strand 5	B	152	161	parallel
Strand 6	B	184	195	anti-parallel
Strand 7	B	173	179	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	93	97	anti-parallel
Strand 3	B	87	88	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	202	205	anti-parallel
Strand 4	B	167	170	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	215	first strand
Strand 2	B	221	228	anti-parallel
Strand 3	B	263	268	parallel
Strand 4	B	281	285	parallel
Strand 5	B	275	276	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	417	418	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	508	first strand
Strand 2	B	462	470	anti-parallel
Strand 3	B	449	457	anti-parallel
Strand 4	B	528	530	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	499	first strand
Strand 2	B	477	484	anti-parallel
Strand 3	B	516	518	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZI5