Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZIE entry

There are 2 chains in PDB entry 5ZIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	VAL 862
B	SER 13	VAL 862

There are 67 helices in PDB entry 5ZIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	21	Right-handed 310
Helix 2	AA2	A	137	141	Right-handed 310
Helix 3	AA3	A	196	199	Right-handed 310
Helix 4	AA4	A	236	255	Right-handed alpha
Helix 5	AA5	A	287	289	Right-handed 310
Helix 6	AA6	A	297	314	Right-handed alpha
Helix 7	AA7	A	328	349	Right-handed alpha
Helix 8	AA8	A	349	358	Right-handed alpha
Helix 9	AA9	A	373	378	Right-handed 310
Helix 10	AB1	A	379	398	Right-handed alpha
Helix 11	AB2	A	398	414	Right-handed alpha
Helix 12	AB3	A	419	432	Right-handed alpha
Helix 13	AB4	A	435	437	Right-handed 310
Helix 14	AB5	A	438	444	Right-handed alpha
Helix 15	AB6	A	534	545	Right-handed alpha
Helix 16	AB7	A	547	568	Right-handed alpha
Helix 17	AB8	A	575	587	Right-handed alpha
Helix 18	AB9	A	592	601	Right-handed alpha
Helix 19	AC1	A	604	610	Right-handed alpha
Helix 20	AC2	A	616	635	Right-handed alpha
Helix 21	AC3	A	635	648	Right-handed alpha
Helix 22	AC4	A	661	679	Right-handed alpha
Helix 23	AC5	A	682	698	Right-handed alpha
Helix 24	AC6	A	701	717	Right-handed alpha
Helix 25	AC7	A	720	732	Right-handed alpha
Helix 26	AC8	A	734	748	Right-handed alpha
Helix 27	AC9	A	752	762	Right-handed alpha
Helix 28	AD1	A	770	784	Right-handed alpha
Helix 29	AD2	A	793	810	Right-handed alpha
Helix 30	AD3	A	810	820	Right-handed alpha
Helix 31	AD4	A	821	822	Right-handed 310
Helix 32	AD5	A	823	827	Right-handed 310
Helix 33	AD6	A	828	846	Right-handed alpha
Helix 34	AD7	A	848	860	Right-handed alpha
Helix 35	AD8	B	19	21	Right-handed 310
Helix 36	AD9	B	137	141	Right-handed 310
Helix 37	AE1	B	229	235	Right-handed 310
Helix 38	AE2	B	236	255	Right-handed alpha
Helix 39	AE3	B	287	289	Right-handed 310
Helix 40	AE4	B	297	314	Right-handed alpha
Helix 41	AE5	B	328	349	Right-handed alpha
Helix 42	AE6	B	349	358	Right-handed alpha
Helix 43	AE7	B	373	378	Right-handed 310
Helix 44	AE8	B	379	398	Right-handed alpha
Helix 45	AE9	B	398	414	Right-handed alpha
Helix 46	AF1	B	419	432	Right-handed alpha
Helix 47	AF2	B	435	437	Right-handed 310
Helix 48	AF3	B	438	444	Right-handed alpha
Helix 49	AF4	B	521	524	Right-handed 310
Helix 50	AF5	B	534	545	Right-handed alpha
Helix 51	AF6	B	547	568	Right-handed alpha
Helix 52	AF7	B	575	587	Right-handed alpha
Helix 53	AF8	B	592	601	Right-handed alpha
Helix 54	AF9	B	604	611	Right-handed alpha
Helix 55	AG1	B	616	648	Right-handed alpha
Helix 56	AG2	B	661	679	Right-handed alpha
Helix 57	AG3	B	682	698	Right-handed alpha
Helix 58	AG4	B	701	717	Right-handed alpha
Helix 59	AG5	B	720	732	Right-handed alpha
Helix 60	AG6	B	734	748	Right-handed alpha
Helix 61	AG7	B	752	761	Right-handed alpha
Helix 62	AG8	B	770	784	Right-handed alpha
Helix 63	AG9	B	793	808	Right-handed alpha
Helix 64	AH1	B	810	819	Right-handed alpha
Helix 65	AH2	B	820	827	Right-handed 310
Helix 66	AH3	B	828	846	Right-handed alpha
Helix 67	AH4	B	848	860	Right-handed alpha

There are 16 sheets in PDB entry 5ZIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	370	371	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	70	77	anti-parallel
Strand 3	A	105	113	anti-parallel
Strand 4	A	43	52	anti-parallel
Strand 5	A	26	36	anti-parallel
Strand 6	A	152	161	parallel
Strand 7	A	184	195	anti-parallel
Strand 8	A	173	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	93	96	anti-parallel
Strand 3	A	87	89	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	128	132	anti-parallel
Strand 3	A	201	205	anti-parallel
Strand 4	A	167	170	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	215	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	263	268	parallel
Strand 4	A	281	285	parallel
Strand 5	A	275	276	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	417	418	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	509	first strand
Strand 2	A	462	470	anti-parallel
Strand 3	A	449	457	anti-parallel
Strand 4	A	528	531	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	499	first strand
Strand 2	A	477	484	anti-parallel
Strand 3	A	516	519	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	370	371	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	70	77	anti-parallel
Strand 3	B	105	113	anti-parallel
Strand 4	B	43	52	anti-parallel
Strand 5	B	26	36	anti-parallel
Strand 6	B	151	161	parallel
Strand 7	B	184	196	anti-parallel
Strand 8	B	173	179	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	93	96	anti-parallel
Strand 3	B	87	89	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	201	205	anti-parallel
Strand 4	B	167	170	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	215	first strand
Strand 2	B	221	228	anti-parallel
Strand 3	B	263	268	parallel
Strand 4	B	281	285	parallel
Strand 5	B	275	276	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	417	418	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	508	first strand
Strand 2	B	462	470	anti-parallel
Strand 3	B	449	457	anti-parallel
Strand 4	B	528	531	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	499	first strand
Strand 2	B	477	484	anti-parallel
Strand 3	B	516	519	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZIE